Literature DB >> 16095343

Unprejudiced identification of reaction mechanisms from biased transition path sampling.

Dirk Zahn1.   

Abstract

A method for unprejudiced investigation of reaction mechanisms from molecular-dynamics simulations is presented. It combines the transition path sampling approach with a biasing strategy, which (a) allows optimization of transition paths crossing an energy minimum of the transition state surface. The bias is then used to (b) find reaction pathways, which follow different mechanistic routes. In the first step the manifold of similar trajectories that correspond to the same mechanism is reduced to a single characteristic dynamical path. Our method then allows a systematic search for further reaction mechanisms and the related energy barriers. It is illustrated at the example of a single particle in a two-dimensional potential and of the rather complex process of the pressure-induced insertion of a helium atom into a C60 buckyball molecule.

Entities:  

Year:  2005        PMID: 16095343     DOI: 10.1063/1.1950672

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  Ab initio molecular dynamics simulation on the formation process of He@C₆₀ synthesized by explosion.

Authors:  Jian-Ying Li; Li-Min Liu; Bo Jin; Hua Liang; Hai-Jun Yu; Hong-Chang Zhang; Shi-Jin Chu; Ru-Fang Peng
Journal:  J Mol Model       Date:  2013-01-08       Impact factor: 1.810

  1 in total

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