Literature DB >> 16093659

Genome evolution mediated by Ty elements in Saccharomyces.

D J Garfinkel1.   

Abstract

How mobile genetic elements molded eukaryotic genomes is a key evolutionary question that gained wider popularity when mobile DNA sequences were shown to comprise about half of the human genome. Although Saccharomyces cerevisiae does not suffer such "genome obesity", five families of LTR-retrotransposons, Ty1, Ty2, Ty3, Ty4, and Ty5 elements, comprise about 3% of its genome. The availability of complete genome sequences from several Saccharomyces species, including members of the closely related sensu stricto group, present new opportunities for analyzing molecular mechanisms for chromosome evolution, speciation, and reproductive isolation. In this review I present key experiments from both the pre- and current genomic sequencing eras suggesting how Ty elements mediate genome evolution.

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Year:  2005        PMID: 16093659     DOI: 10.1159/000084939

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN: 1424-8581            Impact factor:   1.636


  28 in total

1.  Discovery of mutations in Saccharomyces cerevisiae by pooled linkage analysis and whole-genome sequencing.

Authors:  Shanda R Birkeland; Natsuko Jin; Alev Cagla Ozdemir; Robert H Lyons; Lois S Weisman; Thomas E Wilson
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

2.  Ty1 copy number dynamics in Saccharomyces.

Authors:  David J Garfinkel; Katherine M Nyswaner; Karen M Stefanisko; Caroline Chang; Sharon P Moore
Journal:  Genetics       Date:  2005-01-31       Impact factor: 4.562

3.  Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution.

Authors:  Clémentine Vitte; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

4.  Double-strand breaks associated with repetitive DNA can reshape the genome.

Authors:  Juan Lucas Argueso; James Westmoreland; Piotr A Mieczkowski; Malgorzata Gawel; Thomas D Petes; Michael A Resnick
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-13       Impact factor: 11.205

5.  Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences.

Authors:  Andreas Wagner; Nicole de la Chaux
Journal:  Mol Genet Genomics       Date:  2008-08-28       Impact factor: 3.291

6.  Ty1 escapes restriction by the self-encoded factor p22 through mutations in capsid.

Authors:  Jessica M Tucker; David J Garfinkel
Journal:  Mob Genet Elements       Date:  2016-03-07

7.  Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.

Authors:  David Gresham; Renata Usaite; Susanne Manuela Germann; Michael Lisby; David Botstein; Birgitte Regenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

8.  Genome rearrangements caused by depletion of essential DNA replication proteins in Saccharomyces cerevisiae.

Authors:  Edith Cheng; Jessica A Vaisica; Jiongwen Ou; Anastasia Baryshnikova; Yong Lu; Frederick P Roth; Grant W Brown
Journal:  Genetics       Date:  2012-06-05       Impact factor: 4.562

9.  Fragile genomic sites are associated with origins of replication.

Authors:  Sara C Di Rienzi; David Collingwood; M K Raghuraman; Bonita J Brewer
Journal:  Genome Biol Evol       Date:  2009-09-09       Impact factor: 3.416

10.  Remodeling yeast gene transcription by activating the Ty1 long terminal repeat retrotransposon under severe adenine deficiency.

Authors:  Géraldine Servant; Carole Pennetier; Pascale Lesage
Journal:  Mol Cell Biol       Date:  2008-06-30       Impact factor: 4.272

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