Literature DB >> 16093284

How to improve nature: study of the electrostatic properties of the surface of alpha-lactalbumin.

Serge E Permyakov1, George I Makhatadze, Rikard Owenius, Vladimir N Uversky, Charles L Brooks, Eugene A Permyakov, Lawrence J Berliner.   

Abstract

It was recently shown that alpha-lactalbumin interacts with histones and simple models of histone proteins such as positively charged polyamino acids, suggesting that some fundamental aspects of the protein surface electrostatics may come into play. In the present work, the energies of charge-charge interaction in apo- and Ca(2+)-loaded alpha-lactalbumin were calculated using a Tanford-Kirkwood algorithm with either solvent accessibility correction or using a finite difference Poisson-Boltzmann method. The analysis revealed two major regions of alpha-lactalbumin that possessed highly unfavorable electrostatic potentials: (a) the Ca(2+)-binding loop and its neighboring residues and (b) the N-terminal region of the protein. Several individual mutants were prepared to neutralize specific individual surface acidic amino acids at both the N-terminus and Ca(2+)-binding loop of bovine alpha-lactalbumin. These mutants were characterized by intrinsic fluorescence, differential scanning microcalorimetry and circular dichroism. The structural and thermodynamic data agree in every case with the theoretical predictions, confirming that the N-terminal region is very sensitive to changes in charge. For example, desMet D14N mutation destabilizes protein and decreases its calcium affinity. On the other hand, desMet E1M and desMet D37N substitutions increase the thermal stability and calcium affinity. The Met E1Q is characterized by a marked increase in protein stability, whereas desMet E7Q and desMet E11L display a slight increase in calcium affinity and thermal stability. Examination of the unfavorable energy contributed by Glu1 and the energetically favorable consequences of neutralizing this residue suggests that nature may have made an error with bovine alpha-lactalbumin from the viewpoint of stabilizing structure and conformation.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16093284     DOI: 10.1093/protein/gzi051

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  14 in total

1.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

2.  Differential scanning calorimetry of a metalloprotein under controlled metal-ion activity.

Authors:  Masanori Yasui; Taku Miyahara; Tomoyasu Aizawa; Makoto Demura; Katsutoshi Nitta
Journal:  Protein J       Date:  2006-12       Impact factor: 2.371

3.  Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions.

Authors:  Katrina L Schweiker; Arash Zarrine-Afsar; Alan R Davidson; George I Makhatadze
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

4.  Rational stabilization of enzymes by computational redesign of surface charge-charge interactions.

Authors:  Alexey V Gribenko; Mayank M Patel; Jiajing Liu; Scott A McCallum; Chunyu Wang; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

5.  A method to rationally increase protein stability based on the charge-charge interaction, with application to lipase LipK107.

Authors:  Lujia Zhang; Xiaomang Tang; Dongbing Cui; Zhiqiang Yao; Bei Gao; Shuiqin Jiang; Bo Yin; Y Adam Yuan; Dongzhi Wei
Journal:  Protein Sci       Date:  2013-11-22       Impact factor: 6.725

6.  Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics.

Authors:  Oyvind Halskau; Raul Perez-Jimenez; Beatriz Ibarra-Molero; Jarl Underhaug; Victor Muñoz; Aurora Martinez; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

7.  Effects of metal ions on stability and activity of hyperthermophilic pyrolysin and further stabilization of this enzyme by modification of a Ca2+-binding site.

Authors:  Jing Zeng; Xiaowei Gao; Zheng Dai; Bing Tang; Xiao-Feng Tang
Journal:  Appl Environ Microbiol       Date:  2014-02-21       Impact factor: 4.792

8.  Modulation of folding energy landscape by charge-charge interactions: linking experiments with computational modeling.

Authors:  Franco O Tzul; Katrina L Schweiker; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-06       Impact factor: 11.205

9.  Structural and catalytic effects of proline substitution and surface loop deletion in the extended active site of human carbonic anhydrase II.

Authors:  Christopher D Boone; Valerio Rasi; Chingkuang Tu; Robert McKenna
Journal:  FEBS J       Date:  2015-03-23       Impact factor: 5.542

10.  Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models.

Authors:  Vinícius Martins de Oliveira; Vinícius de Godoi Contessoto; Fernando Bruno da Silva; Daniel Lucas Zago Caetano; Sidney Jurado de Carvalho; Vitor Barbanti Pereira Leite
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.