Literature DB >> 16090505

Elastic correlations in nucleosomal DNA structure.

Farshid Mohammad-Rafiee1, Ramin Golestanian.   

Abstract

The structure of DNA in the nucleosome core particle is studied using an elastic model that incorporates anisotropy in the bending energetics and twist-bend coupling. Using the experimentally determined structure of nucleosomal DNA [T. J. Richmond and C. A. Davey, Nature (London) 423, 145 (2003)], it is shown that elastic correlations exist between twist, roll, tilt, and stretching of DNA, as well as the distance between phosphate groups. The twist-bend coupling term is shown to be able to capture these correlations to a large extent, and a fit to the experimental data yields a new estimate of G = 25 nm for the value of the twist-bend coupling constant.

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Year:  2005        PMID: 16090505     DOI: 10.1103/PhysRevLett.94.238102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  6 in total

1.  The nucleosome: a transparent, slippery, sticky and yet stable DNA-protein complex.

Authors:  H Schiessel
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-02       Impact factor: 1.890

2.  Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.

Authors:  Stefanos K Nomidis; Enrico Skoruppa; Enrico Carlon; John F Marko
Journal:  Phys Rev E       Date:  2019-03       Impact factor: 2.529

3.  DNA elasticity from coarse-grained simulations: The effect of groove asymmetry.

Authors:  Enrico Skoruppa; Michiel Laleman; Stefanos K Nomidis; Enrico Carlon
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

4.  Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.

Authors:  Enrico Skoruppa; Stefanos K Nomidis; John F Marko; Enrico Carlon
Journal:  Phys Rev Lett       Date:  2018-08-24       Impact factor: 9.161

Review 5.  Modulation of toll-like receptor signaling by antimicrobial peptides.

Authors:  Ernest Y Lee; Michelle W Lee; Gerard C L Wong
Journal:  Semin Cell Dev Biol       Date:  2018-02-12       Impact factor: 7.727

6.  Geometrical correlations in the nucleosomal DNA conformation and the role of the covalent bonds rigidity.

Authors:  Maryam Ghorbani; Farshid Mohammad-Rafiee
Journal:  Nucleic Acids Res       Date:  2010-10-23       Impact factor: 16.971

  6 in total

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