Literature DB >> 16090358

Canalizing Kauffman networks: nonergodicity and its effect on their critical behavior.

André Auto Moreira1, Luís A Nunes Amaral.   

Abstract

Boolean networks have been used to study numerous phenomena, including gene regulation, neural networks, social interactions, and biological evolution. Here, we propose a general method for determining the critical behavior of Boolean systems built from arbitrary ensembles of Boolean functions. In particular, we solve the critical condition for systems of units operating according to canalizing functions and present strong numerical evidence that our approach correctly predicts the phase transition from order to chaos in such systems.

Mesh:

Year:  2005        PMID: 16090358      PMCID: PMC2128748          DOI: 10.1103/PhysRevLett.94.218702

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  Emergence of homeostasis and "noise imprinting" in an evolution model.

Authors:  M D Stern
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

2.  Random Boolean network models and the yeast transcriptional network.

Authors:  Stuart Kauffman; Carsten Peterson; Björn Samuelsson; Carl Troein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

3.  Efficient system-wide coordination in noisy environments.

Authors:  André A Moreira; Abhishek Mathur; Daniel Diermeier; Luís A N Amaral
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-05       Impact factor: 11.205

4.  Activities and sensitivities in boolean network models.

Authors:  Ilya Shmulevich; Stuart A Kauffman
Journal:  Phys Rev Lett       Date:  2004-07-22       Impact factor: 9.161

5.  Emergence of complex dynamics in a simple model of signaling networks.

Authors:  Luís A N Amaral; Albert Díaz-Guilera; Andre A Moreira; Ary L Goldberger; Lewis A Lipsitz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-25       Impact factor: 11.205

6.  Metabolic stability and epigenesis in randomly constructed genetic nets.

Authors:  S A Kauffman
Journal:  J Theor Biol       Date:  1969-03       Impact factor: 2.691

7.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

Authors:  Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg K Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra G Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

  7 in total
  4 in total

1.  Robustness, canalyzing functions and systems design.

Authors:  Johannes Rauh; Nihat Ay
Journal:  Theory Biosci       Date:  2013-09-18       Impact factor: 1.919

2.  Boolean modeling of collective effects in complex networks.

Authors:  Johannes Norrell; Joshua E S Socolar
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-06-08

3.  Nested Canalyzing, Unate Cascade, and Polynomial Functions.

Authors:  Abdul Salam Jarrah; Blessilda Raposa; Reinhard Laubenbacher
Journal:  Physica D       Date:  2007-09-15       Impact factor: 2.300

4.  A solution to the challenge of optimization on ''golf-course''-like fitness landscapes.

Authors:  Hygor Piaget M Melo; Alexander Franks; André A Moreira; Daniel Diermeier; José S Andrade; Luís A Nunes Amaral
Journal:  PLoS One       Date:  2013-11-05       Impact factor: 3.240

  4 in total

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