Literature DB >> 16090005

Steepest descent calculation of RNA pseudoknots.

M Pillsbury1, Henri Orland, A Zee.   

Abstract

We enumerate possible topologies of pseudoknots in single-stranded RNA molecules. We use a steepest-descent approximation in the large N matrix field theory, and a Feynman diagram formalism to describe the resulting pseudoknot structure.

Mesh:

Substances:

Year:  2005        PMID: 16090005     DOI: 10.1103/PhysRevE.72.011911

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Structural and thermodynamic properties of a linearly perturbed matrix model for RNA folding.

Authors:  I Garg; N Deo
Journal:  Eur Phys J E Soft Matter       Date:  2010-11-18       Impact factor: 1.890

2.  Topological classification and enumeration of RNA structures by genus.

Authors:  J E Andersen; R C Penner; C M Reidys; M S Waterman
Journal:  J Math Biol       Date:  2012-10-02       Impact factor: 2.259

3.  TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots.

Authors:  Michaël Bon; Henri Orland
Journal:  Nucleic Acids Res       Date:  2011-05-18       Impact factor: 16.971

4.  Diagrammatic approaches to RNA structures with trinucleotide repeats.

Authors:  Chi H Mak; Ethan N H Phan
Journal:  Biophys J       Date:  2021-04-19       Impact factor: 3.699

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.