Literature DB >> 16089721

Incorporation of excluded-volume correlations into Poisson-Boltzmann theory.

Dmytro Antypov1, Marcia C Barbosa, Christian Holm.   

Abstract

We investigate the effect of excluded-volume interactions on the electrolyte distribution around a charged macroion. First, we introduce a criterion for determining when hard-core effects should be taken into account beyond standard mean-field Poisson-Boltzmann (PB) theory. Next, we demonstrate that several commonly proposed local-density-functional approaches for excluded-volume interactions cannot be used for this purpose. Instead, we employ a nonlocal excess free energy by using a simple constant-weight approach. We compare the ion distribution and osmotic pressure predicted by this theory with Monte Carlo simulations. They agree very well for weakly developed correlations and give the correct layering effect for stronger ones. In all investigated cases our simple weighted-density theory yields more realistic results than the standard PB approach, whereas all local density theories do not improve on the PB density profiles, but on the contrary, deviate even more from the simulation results.

Entities:  

Year:  2005        PMID: 16089721     DOI: 10.1103/PhysRevE.71.061106

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  The Poisson-Helmholtz-Boltzmann model.

Authors:  K Bohinc; A Shrestha; S May
Journal:  Eur Phys J E Soft Matter       Date:  2011-10-10       Impact factor: 1.890

2.  Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory.

Authors:  Vincent B Chu; Yu Bai; Jan Lipfert; Daniel Herschlag; Sebastian Doniach
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

3.  Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes II: size effects on ionic distributions and diffusion-reaction rates.

Authors:  Benzhuo Lu; Y C Zhou
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 4.  Understanding nucleic acid-ion interactions.

Authors:  Jan Lipfert; Sebastian Doniach; Rhiju Das; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2014-03-05       Impact factor: 23.643

5.  Competitive adsorption and ordered packing of counterions near highly charged surfaces: From mean-field theory to Monte Carlo simulations.

Authors:  Jiayi Wen; Shenggao Zhou; Zhenli Xu; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-04-26

6.  Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.

Authors:  Jan Lipfert; Adelene Y L Sim; Daniel Herschlag; Sebastian Doniach
Journal:  RNA       Date:  2010-03-01       Impact factor: 4.942

Review 7.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

Review 8.  A repulsive field: advances in the electrostatics of the ion atmosphere.

Authors:  Vincent B Chu; Yu Bai; Jan Lipfert; Daniel Herschlag; Sebastian Doniach
Journal:  Curr Opin Chem Biol       Date:  2008-12-08       Impact factor: 8.822

9.  Variational multiscale models for charge transport.

Authors:  Guo-Wei Wei; Qiong Zheng; Zhan Chen; Kelin Xia
Journal:  SIAM Rev Soc Ind Appl Math       Date:  2012-11-08       Impact factor: 10.780

10.  Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.

Authors:  Yu Bai; Vincent B Chu; Jan Lipfert; Vijay S Pande; Daniel Herschlag; Sebastian Doniach
Journal:  J Am Chem Soc       Date:  2008-08-23       Impact factor: 15.419

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