Literature DB >> 16089693

Simultaneous computation of free energies and kinetics of rare events.

Daniele Moroni1, Titus S van Erp, Peter G Bolhuis.   

Abstract

We introduce a method to evaluate simultaneously the reaction rate constant and the free energy profile of a process in a complex environment. The method employs the partial path transition interface sampling technique we recently developed for the calculation of rate constants in diffusive systems. We illustrate the applicability of the technique by studying a simple dimer in a repulsive fluid, and show that the free energy can be obtained at no additional computational cost.

Year:  2005        PMID: 16089693     DOI: 10.1103/PhysRevE.71.056709

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Perspective: Computer simulations of long time dynamics.

Authors:  Ron Elber
Journal:  J Chem Phys       Date:  2016-02-14       Impact factor: 3.488

2.  Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State Models.

Authors:  Ernesto Suárez; Joshua L Adelman; Daniel M Zuckerman
Journal:  J Chem Theory Comput       Date:  2016-07-11       Impact factor: 6.006

3.  Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble.

Authors:  Ali Poursaeidesfahani; Remco Hens; Ahmadreza Rahbari; Mahinder Ramdin; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2017-08-07       Impact factor: 6.006

4.  Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories.

Authors:  Ernesto Suárez; Steven Lettieri; Matthew C Zwier; Carsen A Stringer; Sundar Raman Subramanian; Lillian T Chong; Daniel M Zuckerman
Journal:  J Chem Theory Comput       Date:  2014-03-03       Impact factor: 6.006

  4 in total

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