Literature DB >> 16087442

Bilinear dynamical systems.

W Penny1, Z Ghahramani, K Friston.   

Abstract

In this paper, we propose the use of bilinear dynamical systems (BDS)s for model-based deconvolution of fMRI time-series. The importance of this work lies in being able to deconvolve haemodynamic time-series, in an informed way, to disclose the underlying neuronal activity. Being able to estimate neuronal responses in a particular brain region is fundamental for many models of functional integration and connectivity in the brain. BDSs comprise a stochastic bilinear neurodynamical model specified in discrete time, and a set of linear convolution kernels for the haemodynamics. We derive an expectation-maximization (EM) algorithm for parameter estimation, in which fMRI time-series are deconvolved in an E-step and model parameters are updated in an M-Step. We report preliminary results that focus on the assumed stochastic nature of the neurodynamic model and compare the method to Wiener deconvolution.

Mesh:

Year:  2005        PMID: 16087442      PMCID: PMC1854926          DOI: 10.1098/rstb.2005.1642

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  19 in total

1.  Nonlinear EEG analysis based on a neural mass model.

Authors:  P A Valdes; J C Jimenez; J Riera; R Biscay; T Ozaki
Journal:  Biol Cybern       Date:  1999-11       Impact factor: 2.086

2.  Neurophysiological investigation of the basis of the fMRI signal.

Authors:  N K Logothetis; J Pauls; M Augath; T Trinath; A Oeltermann
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Bayesian estimation of dynamical systems: an application to fMRI.

Authors:  K J Friston
Journal:  Neuroimage       Date:  2002-06       Impact factor: 6.556

4.  Nonlinear interdependence in neural systems: motivation, theory, and relevance.

Authors:  M Breakspear; J R Terry
Journal:  Int J Neurosci       Date:  2002-10       Impact factor: 2.292

5.  A neural mass model for MEG/EEG: coupling and neuronal dynamics.

Authors:  Olivier David; Karl J Friston
Journal:  Neuroimage       Date:  2003-11       Impact factor: 6.556

6.  Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution.

Authors:  Darren R Gitelman; William D Penny; John Ashburner; Karl J Friston
Journal:  Neuroimage       Date:  2003-05       Impact factor: 6.556

7.  Recursive penalized least squares solution for dynamical inverse problems of EEG generation.

Authors:  Okito Yamashita; Andreas Galka; Tohru Ozaki; Rolando Biscay; Pedro Valdes-Sosa
Journal:  Hum Brain Mapp       Date:  2004-04       Impact factor: 5.038

8.  A state-space model of the hemodynamic approach: nonlinear filtering of BOLD signals.

Authors:  Jorge J Riera; Jobu Watanabe; Iwata Kazuki; Miura Naoki; Eduardo Aubert; Tohru Ozaki; Ryuta Kawashima
Journal:  Neuroimage       Date:  2004-02       Impact factor: 6.556

9.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

10.  Comparing dynamic causal models.

Authors:  W D Penny; K E Stephan; A Mechelli; K J Friston
Journal:  Neuroimage       Date:  2004-07       Impact factor: 6.556

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  19 in total

1.  Introduction: multimodal neuroimaging of brain connectivity.

Authors:  Pedro A Valdés-Sosa; Rolf Kötter; Karl J Friston
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

Review 2.  Inferring causality in brain images: a perturbation approach.

Authors:  Tomás Paus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

3.  Joint Estimation of Multiple Graphical Models from High Dimensional Time Series.

Authors:  Huitong Qiu; Fang Han; Han Liu; Brian Caffo
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2015-07-06       Impact factor: 4.488

4.  Adaptive smoothing based on Gaussian processes regression increases the sensitivity and specificity of fMRI data.

Authors:  Francesca Strappini; Elad Gilboa; Sabrina Pitzalis; Kendrick Kay; Mark McAvoy; Arye Nehorai; Abraham Z Snyder
Journal:  Hum Brain Mapp       Date:  2016-12-10       Impact factor: 5.038

5.  Structure learning in coupled dynamical systems and dynamic causal modelling.

Authors:  Amirhossein Jafarian; Peter Zeidman; Vladimir Litvak; Karl Friston
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-10-28       Impact factor: 4.226

6.  Understanding the Impact of Stroke on Brain Motor Function: A Hierarchical Bayesian Approach.

Authors:  Zhe Yu; Raquel Prado; Erin B Quinlan; Steven C Cramer; Hernando Ombao
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

7.  Multivariate dynamical systems models for estimating causal interactions in fMRI.

Authors:  Srikanth Ryali; Kaustubh Supekar; Tianwen Chen; Vinod Menon
Journal:  Neuroimage       Date:  2010-09-25       Impact factor: 6.556

8.  Identification and validation of effective connectivity networks in functional magnetic resonance imaging using switching linear dynamic systems.

Authors:  Jason F Smith; Ajay Pillai; Kewei Chen; Barry Horwitz
Journal:  Neuroimage       Date:  2009-12-05       Impact factor: 6.556

Review 9.  A new look at state-space models for neural data.

Authors:  Liam Paninski; Yashar Ahmadian; Daniel Gil Ferreira; Shinsuke Koyama; Kamiar Rahnama Rad; Michael Vidne; Joshua Vogelstein; Wei Wu
Journal:  J Comput Neurosci       Date:  2009-08-01       Impact factor: 1.621

10.  State-space analysis of working memory in schizophrenia: an fBIRN study.

Authors:  Firdaus Janoos; Gregory Brown; Istvan A Mórocz; William M Wells
Journal:  Psychometrika       Date:  2012-12-29       Impact factor: 2.500

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