Literature DB >> 16085895

Transcriptome-based identification of the Sinorhizobium meliloti NodD1 regulon.

Delphine Capela1, Sébastien Carrere, Jacques Batut.   

Abstract

The NodD1 regulon of Sinorhizobium meliloti was determined through the analysis of the S. meliloti transcriptome in response to the plant flavone luteolin and the overexpression of nodD1. Nine new genes regulated by both NodD1 and luteolin were identified, demonstrating that NodD1 controls few functions behind nodulation in S. meliloti.

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Year:  2005        PMID： 16085895      PMCID： PMC1183327          DOI： 10.1128/AEM.71.8.4910-4913.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  25 in total

1.  A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

Authors:  Gert Thijs; Kathleen Marchal; Magali Lescot; Stephane Rombauts; Bart De Moor; Pierre Rouzé; Yves Moreau
Journal:  J Comput Biol       Date:  2002       Impact factor: 1.479

2.  Inactivation of the nod box distal half-site allows tetrameric NodD to activate nodA transcription in an inducer-independent manner.

Authors:  Jie Feng; Qiang Li; Hai-Liang Hu; Xiao-Chun Chen; Guo-Fan Hong
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

3.  Proteome analysis demonstrates complex replicon and luteolin interactions in pSyma-cured derivatives of Sinorhizobium meliloti strain 2011.

Authors:  H Chen; J Higgins; I J Oresnik; M F Hynes; S Natera; M A Djordjevic; J J Weinman; B G Rolfe
Journal:  Electrophoresis       Date:  2000-11       Impact factor: 3.535

4.  Luteolin and GroESL modulate in vitro activity of NodD.

Authors:  Kuo-Chen Yeh; Melicent C Peck; Sharon R Long
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

5.  Mutational and transcriptional analysis of the type III secretion system of Bradyrhizobium japonicum.

Authors:  Andrea Krause; Anke Doerfel; Michael Göttfert
Journal:  Mol Plant Microbe Interact       Date:  2002-12       Impact factor: 4.171

6.  Multiresistance genes of Rhizobium etli CFN42.

Authors:  R González-Pasayo; E Martínez-Romero
Journal:  Mol Plant Microbe Interact       Date:  2000-05       Impact factor: 4.171

7.  Extracellular proteins involved in soybean cultivar-specific nodulation are associated with pilus-like surface appendages and exported by a type III protein secretion system in Sinorhizobium fredii USDA257.

Authors:  Hari B Krishnan; Julio Lorio; Won Seok Kim; Guoqiao Jiang; Kil Yong Kim; Margreet DeBoer; Steven G Pueppke
Journal:  Mol Plant Microbe Interact       Date:  2003-07       Impact factor: 4.171

8.  Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.

Authors:  Silvia Rüberg; Zhe-Xian Tian; Elizaveta Krol; Burkhard Linke; Folker Meyer; Yiping Wang; Alfred Pühler; Stefan Weidner; Anke Becker
Journal:  J Biotechnol       Date:  2003-12-19       Impact factor: 3.307

9.  nodD alleles of Sinorhizobium fredii USDA191 differentially influence soybean nodulation, nodC expression, and production of exopolysaccharides.

Authors:  Daphne Machado; Hari B Krishnan
Journal:  Curr Microbiol       Date:  2003-08       Impact factor: 2.188

10.  Mechanism of repression by Bacillus subtilis CcpC, a LysR family regulator.

Authors:  Sam-In Kim; Cécile Jourlin-Castelli; Stephen R Wellington; Abraham L Sonenshein
Journal:  J Mol Biol       Date:  2003-12-05       Impact factor: 5.469
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  12 in total

Review 1.  Genomes of the symbiotic nitrogen-fixing bacteria of legumes.

Authors:  Allyson M MacLean; Turlough M Finan; Michael J Sadowsky
Journal:  Plant Physiol       Date:  2007-06       Impact factor: 8.340

Review 2.  Molecular determinants of a symbiotic chronic infection.

Authors:  Katherine E Gibson; Hajime Kobayashi; Graham C Walker
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

3.  FixJ: a major regulator of the oxygen limitation response and late symbiotic functions of Sinorhizobium meliloti.

Authors:  Christine Bobik; Eliane Meilhoc; Jacques Batut
Journal:  J Bacteriol       Date:  2006-07       Impact factor: 3.490

Review 4.  Chitooligosaccharide sensing and downstream signaling: contrasted outcomes in pathogenic and beneficial plant-microbe interactions.

Authors:  Louis-Philippe Hamel; Nathalie Beaudoin
Journal:  Planta       Date:  2010-07-16       Impact factor: 4.116

5.  A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.

Authors:  Anke Becker; Melanie J Barnett; Delphine Capela; Michael Dondrup; Paul-Bertram Kamp; Elizaveta Krol; Burkhard Linke; Silvia Rüberg; Kai Runte; Brenda K Schroeder; Stefan Weidner; Svetlana N Yurgel; Jacques Batut; Sharon R Long; Alfred Pühler; Alexander Goesmann
Journal:  J Biotechnol       Date:  2008-12-06       Impact factor: 3.307

6.  Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

Authors:  Marco Galardini; Alessio Mengoni; Matteo Brilli; Francesco Pini; Antonella Fioravanti; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne Goodwin; Samuel Pitluck; Miriam Land; Loren Hauser; Tanja Woyke; Natalia Mikhailova; Natalia Ivanova; Hajnalka Daligault; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Hazuki Teshima; Stefano Mocali; Marco Bazzicalupo; Emanuele G Biondi
Journal:  BMC Genomics       Date:  2011-05-12       Impact factor: 3.969

7.  Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation.

Authors:  Pablo del Cerro; Amanda Alves Paiva Rolla-Santos; Douglas Fabiano Gomes; Bettina Berquó Marks; Francisco Pérez-Montaño; Miguel Ángel Rodríguez-Carvajal; André Shigueyoshi Nakatani; Antonio Gil-Serrano; Manuel Megías; Francisco Javier Ollero; Mariangela Hungria
Journal:  BMC Genomics       Date:  2015-03-28       Impact factor: 3.969

Review 8.  Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.

Authors:  Irene Jiménez-Guerrero; Sebastián Acosta-Jurado; Pablo Del Cerro; Pilar Navarro-Gómez; Francisco Javier López-Baena; Francisco Javier Ollero; José María Vinardell; Francisco Pérez-Montaño
Journal:  Genes (Basel)       Date:  2017-12-21       Impact factor: 4.096

9.  Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii.

Authors:  Jian Jiao; Meng Ni; Biliang Zhang; Ziding Zhang; J Peter W Young; Ting-Fung Chan; Wen Xin Chen; Hon-Ming Lam; Chang Fu Tian
Journal:  PLoS Genet       Date:  2018-05-24       Impact factor: 5.917

Review 10.  Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia.

Authors:  Martina Lardi; Gabriella Pessi
Journal:  High Throughput       Date:  2018-05-18
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