Literature DB >> 16082362

Discovering DNA regulatory elements with bacteria.

Martha L Bulyk.   

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Year:  2005        PMID: 16082362      PMCID: PMC2720157          DOI: 10.1038/nbt0805-942

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  11 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions.

Authors:  J K Joung; E I Ramm; C O Pabo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.

Authors:  V R Iyer; C E Horak; C S Scafe; D Botstein; M Snyder; P O Brown
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

4.  Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.

Authors:  J D Lieb; X Liu; D Botstein; P O Brown
Journal:  Nat Genet       Date:  2001-08       Impact factor: 38.330

5.  Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Authors:  Sonali Mukherjee; Michael F Berger; Ghil Jona; Xun S Wang; Dale Muzzey; Michael Snyder; Richard A Young; Martha L Bulyk
Journal:  Nat Genet       Date:  2004-11-14       Impact factor: 38.330

6.  A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors.

Authors:  Xiangdong Meng; Michael H Brodsky; Scot A Wolfe
Journal:  Nat Biotechnol       Date:  2005-07-24       Impact factor: 54.908

7.  Identification of the DNA binding site for NGFI-B by genetic selection in yeast.

Authors:  T E Wilson; T J Fahrner; M Johnston; J Milbrandt
Journal:  Science       Date:  1991-05-31       Impact factor: 47.728

8.  Activation of prokaryotic transcription through arbitrary protein-protein contacts.

Authors:  S L Dove; J K Joung; A Hochschild
Journal:  Nature       Date:  1997-04-10       Impact factor: 49.962

9.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

10.  An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.

Authors:  David N Messina; Jarret Glasscock; Warren Gish; Michael Lovett
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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  9 in total

1.  Dissecting transcription regulatory pathways through a new bacterial one-hybrid reporter system.

Authors:  Manman Guo; Hui Feng; Jun Zhang; Wenqin Wang; Yi Wang; Yuqing Li; Chunhui Gao; Huanchun Chen; Ying Feng; Zheng-Guo He
Journal:  Genome Res       Date:  2009-02-18       Impact factor: 9.043

2.  Semi-Supervised Multi-View Learning for Gene Network Reconstruction.

Authors:  Michelangelo Ceci; Gianvito Pio; Vladimir Kuzmanovski; Sašo Džeroski
Journal:  PLoS One       Date:  2015-12-07       Impact factor: 3.240

3.  How to infer gene networks from expression profiles, revisited.

Authors:  Christopher A Penfold; David L Wild
Journal:  Interface Focus       Date:  2011-08-10       Impact factor: 3.906

4.  Isolation and characterization of Ehrlichia chaffeensis RNA polymerase and its use in evaluating p28 outer membrane protein gene promoters.

Authors:  Bonto Faburay; Huitao Liu; Lalitha Peddireddi; Roman R Ganta
Journal:  BMC Microbiol       Date:  2011-04-22       Impact factor: 3.605

5.  Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks.

Authors:  Christopher A Penfold; Vicky Buchanan-Wollaston; Katherine J Denby; David L Wild
Journal:  Bioinformatics       Date:  2012-06-15       Impact factor: 6.937

6.  An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome.

Authors:  Chao Cheng; Erik Andrews; Koon-Kiu Yan; Matthew Ung; Daifeng Wang; Mark Gerstein
Journal:  Genome Biol       Date:  2015-03-31       Impact factor: 13.583

7.  Multi-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks.

Authors:  Paolo Mignone; Gianvito Pio; Sašo Džeroski; Michelangelo Ceci
Journal:  Sci Rep       Date:  2020-12-18       Impact factor: 4.379

8.  A novel approach for transcription factor analysis using SELEX with high-throughput sequencing (TFAST).

Authors:  Daniel J Reiss; Frederick M Howard; Harry L T Mobley
Journal:  PLoS One       Date:  2012-08-03       Impact factor: 3.240

Review 9.  Transcriptional Enhancers in Drosophila.

Authors:  Stephen Small; David N Arnosti
Journal:  Genetics       Date:  2020-09       Impact factor: 4.562

  9 in total

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