Literature DB >> 16081951

Evaluation of the ReSSQ assay in relation to the COBAS AMPLICOR CMV MONITOR test and an in-house nested PCR method for detection of cytomegalovirus DNA.

Benita Zweygberg Wirgart1, Pia Andersson, Lena Grillner.   

Abstract

The ReSSQ CMV assay is a novel commercially available kit for quantification of cytomegalovirus (CMV), based on real-time PCR with a peptide nucleic acid probe coupled with a single dye. In combination with the LightCycler, the ReSSQ CMV assay was evaluated with respect to specificity, PCR inhibition, linearity, reproducibility, and sensitivity. All nontested CMV materials were negative, and the assay was not inhibited by the use of different anticoagulants or other factors that may influence blood samples. The dynamic range was between 10 and 5 x 10(8) copies/PCR, and intra- and interassay variabilities were below 0.10 and 0.12 log10 standard deviations, respectively. Assay sensitivity was validated by analysis of 24 samples from a proficiency panel and by comparison to a nested in-house CMV PCR and the COBAS AMPLICOR CMV MONITOR test, using 159 clinical samples. Results from the proficiency panel were well in accordance with input values over the entire range of viral concentrations tested (50 to 31,250 copies/ml). The association between the ReSSQ CMV assay and the in-house PCR was in agreement in 90% of the clinical samples, and discordant results were found for all types of sample materials analyzed. The ReSSQ CMV and COBAS AMPLICOR assays showed no significant differences for samples containing >1,000 CMV copies/ml, but results differed to a greater extent at lower viral concentrations. The results demonstrate that the ReSSQ CMV assay is a CMV-specific, robust, and reproducible method and hence is well suited for routine use in clinical virology laboratories.

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Year:  2005        PMID: 16081951      PMCID: PMC1233963          DOI: 10.1128/JCM.43.8.4057-4063.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  17 in total

1.  Evaluation of the COBAS AMPLICOR CMV MONITOR test for detection of viral DNA in specimens taken from patients after liver transplantation.

Authors:  I G Sia; J A Wilson; M J Espy; C V Paya; T F Smith
Journal:  J Clin Microbiol       Date:  2000-02       Impact factor: 5.948

2.  Comparison of a duplex quantitative real-time PCR assay and the COBAS Amplicor CMV Monitor test for detection of cytomegalovirus.

Authors:  Björn Herrmann; Viviana Cavaglia Larsson; Carl-Johan Rubin; Fredrik Sund; Britt-Marie Eriksson; Johan Arvidson; Zhibing Yun; Kåre Bondeson; Jonas Blomberg
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

3.  Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA.

Authors:  G Khan; H O Kangro; P J Coates; R B Heath
Journal:  J Clin Pathol       Date:  1991-05       Impact factor: 3.411

4.  PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules.

Authors:  M Egholm; O Buchardt; L Christensen; C Behrens; S M Freier; D A Driver; R H Berg; S K Kim; B Norden; P E Nielsen
Journal:  Nature       Date:  1993-10-07       Impact factor: 49.962

5.  Cytomegalovirus (CMV) DNA load predicts relapsing CMV infection after solid organ transplantation.

Authors:  I G Sia; J A Wilson; C M Groettum; M J Espy; T F Smith; C V Paya
Journal:  J Infect Dis       Date:  2000-02       Impact factor: 5.226

6.  Light-up probes: thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution.

Authors:  N Svanvik; G Westman; D Wang; M Kubista
Journal:  Anal Biochem       Date:  2000-05-15       Impact factor: 3.365

7.  Development of a real-time PCR procedure including an internal control for the measurement of HCMV viral load.

Authors:  F Najioullah; D Thouvenot; B Lina
Journal:  J Virol Methods       Date:  2001-03       Impact factor: 2.014

8.  A real-time TaqMan PCR for routine quantitation of cytomegalovirus DNA in crude leukocyte lysates from stem cell transplant patients.

Authors:  Zhibing Yun; Ilona Lewensohn-Fuchs; Per Ljungman; Lotta Ringholm; Jerker Jonsson; Jan Albert
Journal:  J Virol Methods       Date:  2003-06-09       Impact factor: 2.014

9.  Stability of peptide nucleic acids in human serum and cellular extracts.

Authors:  V V Demidov; V N Potaman; M D Frank-Kamenetskii; M Egholm; O Buchard; S H Sönnichsen; P E Nielsen
Journal:  Biochem Pharmacol       Date:  1994-09-15       Impact factor: 5.858

10.  Distinguishing cytomegalovirus (CMV) infection and disease with CMV nucleic acid assays.

Authors:  Angela M Caliendo; Kirsten St George; Jessica Allega; Arlene C Bullotta; Lisa Gilbane; Charles R Rinaldo
Journal:  J Clin Microbiol       Date:  2002-05       Impact factor: 5.948

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  3 in total

1.  Comparative evaluation of three automated systems for DNA extraction in conjunction with three commercially available real-time PCR assays for quantitation of plasma Cytomegalovirus DNAemia in allogeneic stem cell transplant recipients.

Authors:  Dayana Bravo; María Ángeles Clari; Elisa Costa; Beatriz Muñoz-Cobo; Carlos Solano; María José Remigia; David Navarro
Journal:  J Clin Microbiol       Date:  2011-06-22       Impact factor: 5.948

2.  Screening for seemingly healthy newborns with congenital cytomegalovirus infection by quantitative real-time polymerase chain reaction using newborn urine: an observational study.

Authors:  Akira Yamaguchi; Tsutomu Oh-Ishi; Takashi Arai; Hideaki Sakata; Nodoka Adachi; Satoshi Asanuma; Eiji Oguma; Hirofumi Kimoto; Jiro Matsumoto; Hidetoshi Fujita; Tadashi Uesato; Jutaro Fujita; Ken Shirato; Hideki Ohno; Takako Kizaki
Journal:  BMJ Open       Date:  2017-01-20       Impact factor: 2.692

Review 3.  LightUp probes in clinical diagnostics.

Authors:  Mikael Leijon; Mehrdad Mousavi-Jazi; Mikael Kubista
Journal:  Mol Aspects Med       Date:  2006-02-08
  3 in total

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