Literature DB >> 16078739

[QTL mapping and interaction analysis of genotype x environment (Fe2+ -concentrations ) for mesocotyl length in rice (Oryza sativa L.)].

You-Nan Ouyang1, Qiu-Ying Zhang, Ke-Qin Zhang, Sheng-Miao Yu, Jie-Yun Zhuang, Qian-Yu Jin, Shi-Hua Cheng.   

Abstract

A recombinant inbred lines (RILs) population derived from a cross between Zhenshan97B and Miyang46 was used for detecting QTLs with additive effects and additive-by-additive epistasis for rice mesocotyl length. A linkage map consisting of 207 DNA markers,distributing on the 12 chromosomes of rice,was employed for QTL mapping by using software QTL Mapper 1.6 of mixed linear model. Rice mesocotyl length under germination conditions with 4 different FeSO4 concentrations (0, 1.79, 7.16, 14.32 mmol/L) was measured 7 days after planting. A total of 6 QTLs with significant additive effects on chromosome 1, 5 and 9, with variance explained of 3.5%-11.4%, eleven QTLs with significant additive x additive epistatic effects on chromosome 1, 2, 3, 4, 5, 8 were detected, with variance explained of 4.5%-8.1%. In addition, one QTL for environmental interaction (Fe2+ -concentrations) was detected.

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Year:  2005        PMID: 16078739

Source DB:  PubMed          Journal:  Yi Chuan Xue Bao        ISSN: 0379-4172


  4 in total

Review 1.  Mesocotyl elongation, an essential trait for dry-seeded rice (Oryza sativa L.): a review of physiological and genetic basis.

Authors:  Junhui Zhan; Xiang Lu; Hongyan Liu; Quanzhi Zhao; Guoyou Ye
Journal:  Planta       Date:  2019-12-04       Impact factor: 4.116

2.  Genetic Architecture and Candidate Genes for Deep-Sowing Tolerance in Rice Revealed by Non-syn GWAS.

Authors:  Yan Zhao; Weipeng Zhao; Conghui Jiang; Xiaoning Wang; Huaiyang Xiong; Elena G Todorovska; Zhigang Yin; Yanfa Chen; Xin Wang; Jianyin Xie; Yinghua Pan; Muhammad A R Rashid; Hongliang Zhang; Jinjie Li; Zichao Li
Journal:  Front Plant Sci       Date:  2018-03-16       Impact factor: 5.753

3.  Genome-wide Association Study (GWAS) for Mesocotyl Elongation in Rice (Oryza sativa L.) under Multiple Culture Conditions.

Authors:  Hongyan Liu; Junhui Zhan; Jiaolong Li; Xiang Lu; Jindong Liu; Yamei Wang; Quanzhi Zhao; Guoyou Ye
Journal:  Genes (Basel)       Date:  2019-12-31       Impact factor: 4.096

4.  Rapid Identification of QTL for Mesocotyl Length in Rice Through Combining QTL-seq and Genome-Wide Association Analysis.

Authors:  Yamei Wang; Jindong Liu; Yun Meng; Hongyan Liu; Chang Liu; Guoyou Ye
Journal:  Front Genet       Date:  2021-07-19       Impact factor: 4.599

  4 in total

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