Literature DB >> 16052211

Nature and mechanism of the in vivo oligomerization of nucleoid protein H-NS.

Stefano Stella1, Roberto Spurio, Maurizio Falconi, Cynthia L Pon, Claudio O Gualerzi.   

Abstract

Two types of two-hybrid systems demonstrate that the transcriptional repressor, nucleoid-associated protein H-NS (histone-like, nucleoid structuring protein) forms dimers and tetramers in vivo, the latter being the active form of the protein. The H-NS 'protein oligomerization' domain (N-domain) is unable to oligomerize in the absence of the intradomain linker while the 'DNA-binding' C-domain clearly displays a protein-protein interaction capacity, which contributes to H-NS tetramerization and which is lost following Pro115 mutation. Linker deletion or substitution with KorB linker abolishes H-NS oligomerization. A model describing H-NS dimerization and tetramerization based on all available data and suggesting the existence in the tetramer of a bundle of four alpha-helices, each contributed by an H-NS monomer, is presented.

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Year:  2005        PMID: 16052211      PMCID: PMC1187939          DOI: 10.1038/sj.emboj.7600754

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  36 in total

1.  Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

Authors:  F Hommais; E Krin; C Laurent-Winter; O Soutourina; A Malpertuy; J P Le Caer; A Danchin; P Bertin
Journal:  Mol Microbiol       Date:  2001-04       Impact factor: 3.501

2.  Multimeric self-assembly equilibria involving the histone-like protein H-NS. A thermodynamic study.

Authors:  S Ceschini; G Lupidi; M Coletta; C L Pon; E Fioretti; M Angeletti
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

3.  Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1.

Authors:  Remus Thei Dame; Claire Wyman; Reinhild Wurm; Rolf Wagner; Nora Goosen
Journal:  J Biol Chem       Date:  2001-11-19       Impact factor: 5.157

4.  A two-hybrid system based on chimeric operator recognition for studying protein homo/heterodimerization in Escherichia coli.

Authors:  G Di Lallo; L Castagnoli; P Ghelardini; L Paolozzi
Journal:  Microbiology       Date:  2001-06       Impact factor: 2.777

5.  H-NS mediated compaction of DNA visualised by atomic force microscopy.

Authors:  R T Dame; C Wyman; N Goosen
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

6.  The H-NS dimerization domain defines a new fold contributing to DNA recognition.

Authors:  Vanessa Bloch; Yinshan Yang; Emmanuel Margeat; Alain Chavanieu; Marie Thérèse Augé; Bruno Robert; Stefan Arold; Sylvie Rimsky; Michel Kochoyan
Journal:  Nat Struct Biol       Date:  2003-03

7.  H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein.

Authors:  Diego Esposito; Arsen Petrovic; Richard Harris; Shusuke Ono; John F Eccleston; Amina Mbabaali; Ihtshamul Haq; Christopher F Higgins; Jay C D Hinton; Paul C Driscoll; John E Ladbury
Journal:  J Mol Biol       Date:  2002-12-06       Impact factor: 5.469

8.  An Src homology 3-like domain is responsible for dimerization of the repressor protein KorB encoded by the promiscuous IncP plasmid RP4.

Authors:  Heinrich Delbrück; Günter Ziegelin; Erich Lanka; Udo Heinemann
Journal:  J Biol Chem       Date:  2001-11-15       Impact factor: 5.157

9.  Structural characterization of the N-terminal oligomerization domain of the bacterial chromatin-structuring protein, H-NS.

Authors:  D Renzoni; D Esposito; M Pfuhl; J C Hinton; C F Higgins; P C Driscoll; J E Ladbury
Journal:  J Mol Biol       Date:  2001-03-09       Impact factor: 5.469

10.  Proteins from the prokaryotic nucleoid. A protein-protein cross-linking study on the quaternary structure of Escherichia coli DNA-binding protein NS (HU).

Authors:  M A Losso; R T Pawlik; M A Canonaco; C O Gualerzi
Journal:  Eur J Biochem       Date:  1986-02-17
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  25 in total

Review 1.  H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments.

Authors:  Ricksen S Winardhi; Jie Yan; Linda J Kenney
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

2.  Molecular evolution of the H-NS protein: interaction with Hha-like proteins is restricted to enterobacteriaceae.

Authors:  Cristina Madrid; Jesús García; Miquel Pons; Antonio Juárez
Journal:  J Bacteriol       Date:  2006-10-13       Impact factor: 3.490

3.  Dissecting RNA chaperone activity.

Authors:  Lukas Rajkowitsch; Renée Schroeder
Journal:  RNA       Date:  2007-09-27       Impact factor: 4.942

4.  Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS.

Authors:  Marco Sette; Roberto Spurio; Edoardo Trotta; Cinzia Brandizi; Anna Brandi; Cynthia L Pon; Gaetano Barbato; Rolf Boelens; Claudio O Gualerzi
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

5.  The 5.5 protein of phage T7 inhibits H-NS through interactions with the central oligomerization domain.

Authors:  Sabrina S Ali; Emily Beckett; Sandy Jeehoon Bae; William Wiley Navarre
Journal:  J Bacteriol       Date:  2011-07-15       Impact factor: 3.490

6.  Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins.

Authors:  Shivalika Saxena; J Gowrishankar
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

7.  Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins.

Authors:  Blair R G Gordon; Yifei Li; Atina Cote; Matthew T Weirauch; Pengfei Ding; Timothy R Hughes; William Wiley Navarre; Bin Xia; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-14       Impact factor: 11.205

8.  A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri.

Authors:  Mara Giangrossi; Gianni Prosseda; Chi Nhan Tran; Anna Brandi; Bianca Colonna; Maurizio Falconi
Journal:  Nucleic Acids Res       Date:  2010-02-03       Impact factor: 16.971

9.  H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization.

Authors:  Simon J Wardle; Amanda Chan; David B Haniford
Journal:  Nucleic Acids Res       Date:  2009-08-20       Impact factor: 16.971

10.  Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS.

Authors:  Rosa C Baños; Aitziber Vivero; Sonia Aznar; Jesús García; Miquel Pons; Cristina Madrid; Antonio Juárez
Journal:  PLoS Genet       Date:  2009-06-12       Impact factor: 5.917

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