Literature DB >> 16045295

An analytical, variable resolution, complete description of static molecules and their intermolecular binding properties.

Jr-Hung Lin1, Timothy Clark.   

Abstract

A fully analytical description of molecular shape, as defined by the shrink-wrap isodensity or solvent-excluded surfaces and local properties related to Coulomb, donor/acceptor, and polarizability (dispersion) interactions is described. The molecular surface and four local properties adequate for describing intermolecular interactions (the molecular electrostatic potential and the local ionization energy, electron affinity, and polarizability) are fitted to spherical-harmonic expansions, which provide a compact and information-rich description of the properties of the static molecule. The resolution of the description can be varied from isotropic to near atomistic detail by adjusting the order of the individual spherical-harmonic expansions. Examples are given to illustrate the effect of truncating the different spherical-harmonic approximations.

Entities:  

Year:  2005        PMID: 16045295     DOI: 10.1021/ci050059v

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  5 in total

1.  Pattern recognition based on color-coded quantum mechanical surfaces for molecular alignment.

Authors:  Brian D Hudson; David C Whitley; Martyn G Ford; Martin Swain; Jonathan W Essex
Journal:  J Mol Model       Date:  2007-11-24       Impact factor: 1.810

2.  A consistent force field parameter set for zwitterionic amino acid residues.

Authors:  Anselm H C Horn
Journal:  J Mol Model       Date:  2014-10-24       Impact factor: 1.810

3.  Spherical harmonics coefficients for ligand-based virtual screening of cyclooxygenase inhibitors.

Authors:  Quan Wang; Kerstin Birod; Carlo Angioni; Sabine Grösch; Tim Geppert; Petra Schneider; Matthias Rupp; Gisbert Schneider
Journal:  PLoS One       Date:  2011-07-27       Impact factor: 3.240

4.  Quantitative structure-property relationships for predicting sorption of pharmaceuticals to sewage sludge during waste water treatment processes.

Authors:  L Berthod; D C Whitley; G Roberts; A Sharpe; R Greenwood; G A Mills
Journal:  Sci Total Environ       Date:  2016-12-03       Impact factor: 7.963

Review 5.  Advances in the Development of Shape Similarity Methods and Their Application in Drug Discovery.

Authors:  Ashutosh Kumar; Kam Y J Zhang
Journal:  Front Chem       Date:  2018-07-25       Impact factor: 5.221

  5 in total

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