Literature DB >> 16043388

Time to grow up: the temporal role of smallRNAs in plants.

Matthew R Willmann1, R Scott Poethig.   

Abstract

Over the past two years, several Arabidopsis genes that were initially identified as vegetative phase change mutants have been shown to have roles in smallRNA (sRNA) biogenesis. This has led to the identification of a new class of short interfering RNAs (siRNAs) called trans-acting siRNAs (ta-siRNAs).

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Year:  2005        PMID： 16043388      PMCID： PMC1610105          DOI： 10.1016/j.pbi.2005.07.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  48 in total

1.  Developmental patterns of chromatin structure and DNA methylation responsible for epigenetic expression of a maize regulatory gene.

Authors:  O A Hoekenga; M G Muszynski; K C Cone
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

Review 2.  The developmental role of microRNA in plants.

Authors:  Catherine A Kidner; Robert A Martienssen
Journal:  Curr Opin Plant Biol       Date:  2005-02       Impact factor: 7.834

3.  microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

Authors:  Edwards Allen; Zhixin Xie; Adam M Gustafson; James C Carrington
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

4.  A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes.

Authors:  Leor Williams; Cristel C Carles; Karen S Osmont; Jennifer C Fletcher
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-24       Impact factor: 11.205

5.  Nuclear processing and export of microRNAs in Arabidopsis.

Authors:  Mee Yeon Park; Gang Wu; Alfredo Gonzalez-Sulser; Hervé Vaucheret; R Scott Poethig
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

6.  Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40.

Authors:  T Z Berardini; K Bollman; H Sun; R S Poethig
Journal:  Science       Date:  2001-03-23       Impact factor: 47.728

7.  Heteroblasty in Arabidopsis thaliana (L.) Heynh.

Authors:  H Tsukaya; K Shoda; G T Kim; H Uchimiya
Journal:  Planta       Date:  2000-03       Impact factor: 4.116

8.  Computational prediction of miRNAs in Arabidopsis thaliana.

Authors:  Alex Adai; Cameron Johnson; Sizolwenkosi Mlotshwa; Sarah Archer-Evans; Varun Manocha; Vicki Vance; Venkatesan Sundaresan
Journal:  Genome Res       Date:  2005-01       Impact factor: 9.043

9.  The SERRATE locus controls the formation of the early juvenile leaves and phase length in Arabidopsis.

Authors:  J H Clarke; D Tack; K Findlay; M Van Montagu; M Van Lijsebettens
Journal:  Plant J       Date:  1999-11       Impact factor: 6.417

10.  Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems.

Authors:  S E Jacobsen; M P Running; E M Meyerowitz
Journal:  Development       Date:  1999-12       Impact factor: 6.868
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  12 in total

Review 1.  Regulation of transcription in plants: mechanisms controlling developmental switches.

Authors:  Kerstin Kaufmann; Alice Pajoro; Gerco C Angenent
Journal:  Nat Rev Genet       Date:  2010-11-10       Impact factor: 53.242

2.  Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation.

Authors:  Hui Li; Ying Deng; Tianlong Wu; Senthil Subramanian; Oliver Yu
Journal:  Plant Physiol       Date:  2010-05-27       Impact factor: 8.340

3.  Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.

Authors:  Miya D Howell; Noah Fahlgren; Elisabeth J Chapman; Jason S Cumbie; Christopher M Sullivan; Scott A Givan; Kristin D Kasschau; James C Carrington
Journal:  Plant Cell       Date:  2007-03-30       Impact factor: 11.277

4.  Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.).

Authors:  Jillian M Foerster; Timothy Beissinger; Natalia de Leon; Shawn Kaeppler
Journal:  Theor Appl Genet       Date:  2015-01-10       Impact factor: 5.699

5.  DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana.

Authors:  Robert J Schmitz; Lewis Hong; Kathleen E Fitzpatrick; Richard M Amasino
Journal:  Genetics       Date:  2007-06       Impact factor: 4.562

6.  Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.

Authors:  Angélica Cibrián-Jaramillo; Jose E De la Torre-Bárcena; Ernest K Lee; Manpreet S Katari; Damon P Little; Dennis W Stevenson; Rob Martienssen; Gloria M Coruzzi; Rob DeSalle
Journal:  Genome Biol Evol       Date:  2010-07-12       Impact factor: 3.416

7.  HYL1 controls the miR156-mediated juvenile phase of vegetative growth.

Authors:  Shuxia Li; Xi Yang; Feijie Wu; Yuke He
Journal:  J Exp Bot       Date:  2012-01-20       Impact factor: 6.992

8.  A genome-wide characterization of microRNA genes in maize.

Authors:  Lifang Zhang; Jer-Ming Chia; Sunita Kumari; Joshua C Stein; Zhijie Liu; Apurva Narechania; Christopher A Maher; Katherine Guill; Michael D McMullen; Doreen Ware
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917

9.  Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants.

Authors:  Ana Beatriz Moreno; Angel Emilio Martínez de Alba; Florian Bardou; Martin D Crespi; Hervé Vaucheret; Alexis Maizel; Allison C Mallory
Journal:  Nucleic Acids Res       Date:  2013-03-12       Impact factor: 16.971

10.  Controlling RNA self-assembly to form filaments.

Authors:  Lorena Nasalean; Stéphanie Baudrey; Neocles B Leontis; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2006-03-06       Impact factor: 16.971
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