Literature DB >> 16030072

GeneCruiser: a web service for the annotation of microarray data.

Ted Liefeld1, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P Mesirov.   

Abstract

SUMMARY: GeneCruiser is a web service allowing users to annotate their genomic data by mapping microarray feature identifiers to gene identifiers from databases, such as UniGene, while providing links to web resources, such as the UCSC Genome Browser. It relies on a regularly updated database that retrieves and indexes the mappings between microarray probes and genomic databases. Genes are identified using the Life Sciences Identifier standard. AVAILABILITY: GeneCruiser is freely available in the following forms: Web service and Web application, http://www.genecruiser.org; GenePattern, GeneCruiser access has been integrated into our microarray analysis platform, GenePattern. http://www.genepattern.org.

Mesh：

Year:  2005        PMID： 16030072     DOI： 10.1093/bioinformatics/bti587

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  11 in total

1.  Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.

Authors:  Jennifer E Ho; Wei-Yu Chen; Ming-Huei Chen; Martin G Larson; Elizabeth L McCabe; Susan Cheng; Anahita Ghorbani; Erin Coglianese; Valur Emilsson; Andrew D Johnson; Stefan Walter; Nora Franceschini; Christopher J O'Donnell; Abbas Dehghan; Chen Lu; Daniel Levy; Christopher Newton-Cheh; Honghuang Lin; Janine F Felix; Eric R Schreiter; Ramachandran S Vasan; James L Januzzi; Richard T Lee; Thomas J Wang
Journal:  J Clin Invest       Date:  2013-09-03       Impact factor: 14.808

2.  SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.

Authors:  Andrew D Johnson; Robert E Handsaker; Sara L Pulit; Marcia M Nizzari; Christopher J O'Donnell; Paul I W de Bakker
Journal:  Bioinformatics       Date:  2008-10-30       Impact factor: 6.937

3.  Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis.

Authors:  Rebecca D Edmonds; Yoram Vodovotz; Claudio Lagoa; Joyeeta Dutta-Moscato; Yawching Yang; Mitchell P Fink; Ryan M Levy; Jose M Prince; David J Kaczorowski; George C Tseng; Timothy R Billiar
Journal:  Physiol Genomics       Date:  2011-08-09       Impact factor: 3.107

4.  Linkage and association analysis of obesity traits reveals novel loci and interactions with dietary n-3 fatty acids in an Alaska Native (Yup'ik) population.

Authors:  Laura Kelly Vaughan; Howard W Wiener; Stella Aslibekyan; David B Allison; Peter J Havel; Kimber L Stanhope; Diane M O'Brien; Scarlett E Hopkins; Dominick J Lemas; Bert B Boyer; Hemant K Tiwari
Journal:  Metabolism       Date:  2015-03-05       Impact factor: 8.694

5.  CK1epsilon is required for breast cancers dependent on beta-catenin activity.

Authors:  So Young Kim; Ian F Dunn; Ron Firestein; Piyush Gupta; Leslie Wardwell; Kara Repich; Anna C Schinzel; Ben Wittner; Serena J Silver; David E Root; Jesse S Boehm; Sridhar Ramaswamy; Eric S Lander; William C Hahn
Journal:  PLoS One       Date:  2010-02-01       Impact factor: 3.240

6.  Strategies for aggregating gene expression data: the collapseRows R function.

Authors:  Jeremy A Miller; Chaochao Cai; Peter Langfelder; Daniel H Geschwind; Sunil M Kurian; Daniel R Salomon; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.169

7.  GeneTools--application for functional annotation and statistical hypothesis testing.

Authors:  Vidar Beisvag; Frode K R Jünge; Hallgeir Bergum; Lars Jølsum; Stian Lydersen; Clara-Cecilie Günther; Heri Ramampiaro; Mette Langaas; Arne K Sandvik; Astrid Laegreid
Journal:  BMC Bioinformatics       Date:  2006-10-24       Impact factor: 3.169

8.  Linking microarray reporters with protein functions.

Authors:  Stan Gaj; Arie van Erk; Rachel I M van Haaften; Chris T A Evelo
Journal:  BMC Bioinformatics       Date:  2007-09-26       Impact factor: 3.169

9.  Should we have blind faith in bioinformatics software? Illustrations from the SNAP web-based tool.

Authors:  Sébastien Robiou-du-Pont; Aihua Li; Shanice Christie; Zahra N Sohani; David Meyre
Journal:  PLoS One       Date:  2015-03-05       Impact factor: 3.240

10.  Exon level integration of proteomics and microarray data.

Authors:  Danny A Bitton; Michał J Okoniewski; Yvonne Connolly; Crispin J Miller
Journal:  BMC Bioinformatics       Date:  2008-02-25       Impact factor: 3.169
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