Literature DB >> 16027352

Mind the gaps: progress in progressive alignment.

D G Higgins1, G Blackshields, I M Wallace.   

Abstract

Mesh：

Year:  2005        PMID： 16027352      PMCID： PMC1180805          DOI： 10.1073/pnas.0504801102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  18 in total

1.  Predicting reliable regions in protein sequence alignments.

Authors:  Melissa Cline; Richard Hughey; Kevin Karplus
Journal:  Bioinformatics       Date:  2002-02       Impact factor: 6.937

2.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

3.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

4.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

5.  An algorithm for progressive multiple alignment of sequences with insertions.

Authors:  Ari Löytynoja; Nick Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-06       Impact factor: 11.205

6.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

7.  A flexible method to align large numbers of biological sequences.

Authors:  W R Taylor
Journal:  J Mol Evol       Date:  1988 Dec-1989 Feb       Impact factor: 2.395

8.  Progressive sequence alignment as a prerequisite to correct phylogenetic trees.

Authors:  D F Feng; R F Doolittle
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

9.  The alignment of sets of sequences and the construction of phyletic trees: an integrated method.

Authors:  P Hogeweg; B Hesper
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

10.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469
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  3 in total

1.  Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions.

Authors:  Mohamed A F Noor; David A Garfield; Stephen W Schaeffer; Carlos A Machado
Journal:  Genetics       Date:  2007-11       Impact factor: 4.562

2.  MC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures.

Authors:  David Díaz; Francisco J Esteban; Pilar Hernández; Juan Antonio Caballero; Antonio Guevara; Gabriel Dorado; Sergio Gálvez
Journal:  PLoS One       Date:  2014-04-07       Impact factor: 3.240

3.  A macaque's-eye view of human insertions and deletions: differences in mechanisms.

Authors:  Erika M Kvikstad; Svitlana Tyekucheva; Francesca Chiaromonte; Kateryna D Makova
Journal:  PLoS Comput Biol       Date:  2007-07-27       Impact factor: 4.475
  3 in total

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