Literature DB >> 16018254

[Enrichment of giant panda microsatellite markers using dynal magnet beads].

Fu-Jun Shen1, Phill Watts, Zhi-He Zhang, An-Ju Zhang, Stephanie Sanderson, Steve J Kemp, Bi-Song Yue.   

Abstract

The 400 -600 bp DNA fractions of giant panda containing STR sequences were captured by hybridization with the oligonucleotide probes attached to streptavadin coated magnetic beads (Dynal). The enriched DNA were ligated into pGEM-T and then transformed into E. coil JM109 competent cells. In total 260 positive clones were identified from 2 880 transformants in the libraries which were screened by gamma-32 P radiolabelled probes. Finally, we got 54 sequences and successfully designed 37 pairs of STR primers for giant panda. The results showed that this method is very efficient to isolate microsatellite markers.

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Year:  2005        PMID: 16018254

Source DB:  PubMed          Journal:  Yi Chuan Xue Bao        ISSN: 0379-4172


  4 in total

1.  Genetic evidence of recent population contraction in the southernmost population of giant pandas.

Authors:  Yibo Hu; Dunwu Qi; Hongjia Wang; Fuwen Wei
Journal:  Genetica       Date:  2010-12-01       Impact factor: 1.082

2.  Landscape features influence gene flow as measured by cost-distance and genetic analyses: a case study for giant pandas in the Daxiangling and Xiaoxiangling Mountains.

Authors:  Lifeng Zhu; Xiangjiang Zhan; Tao Meng; Shanning Zhang; Fuwen Wei
Journal:  BMC Genet       Date:  2010-07-23       Impact factor: 2.797

3.  Genome-wide survey and analysis of microsatellites in giant panda (Ailuropoda melanoleuca), with a focus on the applications of a novel microsatellite marker system.

Authors:  Jie Huang; Yu-Zhi Li; Lian-Ming Du; Bo Yang; Fu-Jun Shen; He-Min Zhang; Zhi-He Zhang; Xiu-Yue Zhang; Bi-Song Yue
Journal:  BMC Genomics       Date:  2015-02-07       Impact factor: 3.969

4.  Walking in a heterogeneous landscape: Dispersal, gene flow and conservation implications for the giant panda in the Qinling Mountains.

Authors:  Tianxiao Ma; Yibo Hu; Isa-Rita M Russo; Yonggang Nie; Tianyou Yang; Lijuan Xiong; Shuai Ma; Tao Meng; Han Han; Ximing Zhang; Michael W Bruford; Fuwen Wei
Journal:  Evol Appl       Date:  2018-08-31       Impact factor: 5.183

  4 in total

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