Literature DB >> 16014499

Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.

Kelly P Nevin1, Dawn E Holmes1, Trevor L Woodard1, Erich S Hinlein2, David W Ostendorf2, Derek R Lovley1.   

Abstract

Fe(III)-reducing isolates were recovered from two aquifers in which Fe(III) reduction is known to be important. Strain Bem(T) was enriched from subsurface sediments collected in Bemidji, MN, USA, near a site where Fe(III) reduction is important in aromatic hydrocarbon degradation. Strains P11, P35(T) and P39 were isolated from the groundwater of an aquifer in Plymouth, MA, USA, in which Fe(III) reduction is important because of long-term inputs of acetate as a highway de-icing agent to the subsurface. All four isolates were Gram-negative, slightly curved rods that grew best in freshwater media. Strains P11, P35(T) and P39 exhibited motility via means of monotrichous flagella. Analysis of the 16S rRNA and nifD genes indicated that all four strains are delta-proteobacteria and members of the Geobacter cluster of the Geobacteraceae. Differences in phenotypic and phylogenetic characteristics indicated that the four isolates represent two novel species within the genus Geobacter. All of the isolates coupled the oxidation of acetate to the reduction of Fe(III) [iron(III) citrate, amorphous iron(III) oxide, iron(III) pyrophosphate and iron(III) nitrilotriacetate]. All four strains utilized ethanol, lactate, malate, pyruvate and succinate as electron donors and malate and fumarate as electron acceptors. Strain Bem(T) grew fastest at 30 degrees C, whereas strains P11, P35(T) and P39 grew equally well at 17, 22 and 30 degrees C. In addition, strains P11, P35(T) and P39 were capable of growth at 4 degrees C. The names Geobacter bemidjiensis sp. nov. (type strain Bem(T)=ATCC BAA-1014(T)=DSM 16622(T)=JCM 12645(T)) and Geobacter psychrophilus sp. nov. (strains P11, P35(T) and P39; type strain P35(T)=ATCC BAA-1013(T)=DSM 16674(T)=JCM 12644(T)) are proposed.

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Year:  2005        PMID: 16014499     DOI: 10.1099/ijs.0.63417-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  40 in total

1.  Spatial heterogeneity of bacterial communities in sediments from an infiltration basin receiving highway runoff.

Authors:  Camelia Rotaru; Trevor L Woodard; Seokyoon Choi; Kelly P Nevin
Journal:  Microb Ecol       Date:  2012-03-06       Impact factor: 4.552

Review 2.  In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.

Authors:  Radhakrishnan Mahadevan; Bernhard Ø Palsson; Derek R Lovley
Journal:  Nat Rev Microbiol       Date:  2010-12-06       Impact factor: 60.633

3.  Lactate oxidation coupled to iron or electrode reduction by Geobacter sulfurreducens PCA.

Authors:  Douglas F Call; Bruce E Logan
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

4.  Molecular analysis of spatial variation of iron-reducing bacteria in riverine alluvial aquifers of the Mankyeong River.

Authors:  So-Jeong Kim; Dong-Chan Koh; Soo-Je Park; In-Tae Cha; Joong-Wook Park; Jong-Hwa Na; Yul Roh; Kyung-Seok Ko; Kangjoo Kim; Sung-Keun Rhee
Journal:  J Microbiol       Date:  2012-04-27       Impact factor: 3.422

5.  Identification of a transcriptional repressor involved in benzoate metabolism in Geobacter bemidjiensis.

Authors:  Toshiyuki Ueki
Journal:  Appl Environ Microbiol       Date:  2011-08-05       Impact factor: 4.792

6.  Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland.

Authors:  Viggó Thór Marteinsson; Árni Rúnarsson; Andri Stefánsson; Thorsteinn Thorsteinsson; Tómas Jóhannesson; Sveinn H Magnússon; Eyjólfur Reynisson; Bergur Einarsson; Nicole Wade; Hilary G Morrison; Eric Gaidos
Journal:  ISME J       Date:  2012-09-13       Impact factor: 10.302

7.  Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA.

Authors:  Tomoyuki Hori; Matthias Noll; Yasuo Igarashi; Michael W Friedrich; Ralf Conrad
Journal:  Appl Environ Microbiol       Date:  2006-10-27       Impact factor: 4.792

Review 8.  Distribution of CO(2) fixation and acetate mineralization pathways in microorganisms from extremophilic anaerobic biotopes.

Authors:  Lilia Montoya; Lourdes B Celis; Elías Razo-Flores; Angel G Alpuche-Solís
Journal:  Extremophiles       Date:  2012-10-12       Impact factor: 2.395

9.  The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.

Authors:  Muktak Aklujkar; Nelson D Young; Dawn Holmes; Milind Chavan; Carla Risso; Hajnalka E Kiss; Cliff S Han; Miriam L Land; Derek R Lovley
Journal:  BMC Genomics       Date:  2010-09-09       Impact factor: 3.969

10.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.

Authors:  Jessica E Butler; Nelson D Young; Derek R Lovley
Journal:  BMC Genomics       Date:  2010-01-17       Impact factor: 3.969

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