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Literature DB >> 16014369

Applying GIFT, a Gene Interactions Finder in Text, to fly literature.

Abstract

UNLABELLED: A number of freely available text mining tools have been put together to extract highly reliable Drosophila gene interaction data from text. The system has been tested with The Interactive Fly, showing low recall (27-34%), but very high precision (93-97%). AVAILABILITY: The extracted data and a web interface for submission of texts to GIFT analysis are available at http://gift.cryst.bbk.ac.uk/gift CONTACT: n.domedel_puig@cryst.bbk.ac.uk SUPPLEMENTARY INFORMATION: Additional documentation, such as the dictionaries and the reference sets, are available at the GIFT website.

Entities: Species

Mesh：

Substances：
Drosophila Proteins

Year: 2005 PMID： 16014369 DOI： 10.1093/bioinformatics/bti578

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

5 in total

Applying GIFT, a Gene Interactions Finder in Text, to fly literature.

1. Benchmarking natural-language parsers for biological applications using dependency graphs.

2. Automatic extraction of biomolecular interactions: an empirical approach.

3. A realistic assessment of methods for extracting gene/protein interactions from free text.

4. PathBinder--text empirics and automatic extraction of biomolecular interactions.

5. Identification of transcription factor contexts in literature using machine learning approaches.