Literature DB >> 16012050

Conservation of eubacterial replicases.

Gene Wijffels1, Brian Dalrymple, Kritaya Kongsuwan, Nicholas E Dixon.   

Abstract

The last 15 years of effort in understanding bacterial DNA replication and repair has identified that the donut shaped beta2 sliding clamp is harnessed by very functionally different DNA polymerases throughout the lifecycle of the bacterial cell. Remarkably, the sites of binding of these polymerases, in most cases, appear to be the same shallow pocket on the beta dimer. In every case, binding of beta2 by the polymerase enhances their processivity of DNA synthesis. This binding site is also the same point of interaction between beta2 and the clamp loader complex, which binds beta2, opens and places it onto the DNA strand and then vacates the site. Beta2 may also be involved in the initiation of DNA replication again via contact through this same site. While much of the research effort has focused on Escherichia coli and Bacillus subtilis, conservation of this complex system is becoming apparent in diverse bacteria.

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Year:  2005        PMID: 16012050     DOI: 10.1080/15216540500138246

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  12 in total

Review 1.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

2.  Crystallization and preliminary X-ray diffraction analysis of the Bacillus subtilis replication termination protein in complex with the 37-base-pair TerI-binding site.

Authors:  J P Vivian; C Porter; J A Wilce; M C J Wilce
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-10-20

Review 3.  Loading clamps for DNA replication and repair.

Authors:  Linda B Bloom
Journal:  DNA Repair (Amst)       Date:  2009-02-11

4.  Deletion of dnaN1 generates a mutator phenotype in Bacillus anthracis.

Authors:  Hanjing Yang; Jeffrey H Miller
Journal:  DNA Repair (Amst)       Date:  2008-01-31

5.  A structural basis for the regulatory inactivation of DnaA.

Authors:  Qingping Xu; Daniel McMullan; Polat Abdubek; Tamara Astakhova; Dennis Carlton; Connie Chen; Hsiu-Ju Chiu; Thomas Clayton; Debanu Das; Marc C Deller; Lian Duan; Marc-Andre Elsliger; Julie Feuerhelm; Joanna Hale; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Piotr Kozbial; S Sri Krishna; Abhinav Kumar; David Marciano; Mitchell D Miller; Andrew T Morse; Edward Nigoghossian; Amanda Nopakun; Linda Okach; Silvya Oommachen; Jessica Paulsen; Christina Puckett; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Christine Trame; Henry van den Bedem; Dana Weekes; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  J Mol Biol       Date:  2008-10-30       Impact factor: 5.469

6.  A Synergistic Combination Against Chronic Myeloid Leukemia: An Intra-molecular Mechanism of Communication in BCR-ABL1 Resistance.

Authors:  Ahmed A El Rashedy; Patrick Appiah-Kubi; Mahmoud E S Soliman
Journal:  Protein J       Date:  2019-04       Impact factor: 2.371

7.  Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication.

Authors:  Sundari Chodavarapu; Magdalena M Felczak; Jon M Kaguni
Journal:  Nucleic Acids Res       Date:  2011-02-02       Impact factor: 16.971

Review 8.  Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target.

Authors:  Andrew Robinson; Rebecca J Causer; Nicholas E Dixon
Journal:  Curr Drug Targets       Date:  2012-03       Impact factor: 3.465

9.  Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells.

Authors:  M Charl Moolman; Sriram Tiruvadi Krishnan; Jacob W J Kerssemakers; Aafke van den Berg; Pawel Tulinski; Martin Depken; Rodrigo Reyes-Lamothe; David J Sherratt; Nynke H Dekker
Journal:  Nat Commun       Date:  2014-12-18       Impact factor: 14.919

10.  Structure-based function prediction of uncharacterized protein using binding sites comparison.

Authors:  Janez Konc; Milan Hodošček; Mitja Ogrizek; Joanna Trykowska Konc; Dušanka Janežič
Journal:  PLoS Comput Biol       Date:  2013-11-14       Impact factor: 4.475

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