Literature DB >> 16000838

Colonic microbiota signatures across five northern European countries.

Christophe Lay1, Lionel Rigottier-Gois, Kim Holmstrøm, Mirjana Rajilic, Elaine E Vaughan, Willem M de Vos, Matthew D Collins, Ralph Thiel, Pawel Namsolleck, Michaël Blaut, Joël Doré.   

Abstract

The composition of the colonic microbiota of 91 northern Europeans was characterized by fluorescent in situ hybridization using 18 phylogenetic probes. On average 75% of the bacteria were identified, and large interindividual variations were observed. Clostridium coccoides and Clostridium leptum were the dominant groups (28.0% and 25.2%), followed by the Bacteroides (8.5%). According to principal component analysis, no significant grouping with respect to geographic origin, age, or gender was observed.

Entities:  

Mesh：

Year:  2005        PMID： 16000838      PMCID： PMC1169042          DOI： 10.1128/AEM.71.7.4153-4155.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  14 in total

1.  Extensive set of 16S rRNA-based probes for detection of bacteria in human feces.

Authors:  Hermie J M Harmsen; Gerwin C Raangs; Tao He; John E Degener; Gjalt W Welling
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

2.  Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20.

Authors:  G W Tannock; K Munro; H J Harmsen; G W Welling; J Smart; P K Gopal
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

3.  Fluorescent hybridisation combined with flow cytometry and hybridisation of total RNA to analyse the composition of microbial communities in human faeces using 16S rRNA probes.

Authors:  Lionel Rigottier-Gois; Anne-Gaëlle Bourhis; Geneviève Gramet; Violaine Rochet; Joël Doré
Journal:  FEMS Microbiol Ecol       Date:  2003-03-01       Impact factor: 4.194

Review 4.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

5.  Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.

Authors:  A Suau; R Bonnet; M Sutren; J J Godon; G R Gibson; M D Collins; J Doré
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

6.  Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota.

Authors:  Christophe Lay; Malène Sutren; Violaine Rochet; Katiana Saunier; Joël Doré; Lionel Rigottier-Gois
Journal:  Environ Microbiol       Date:  2005-07       Impact factor: 5.491

7.  Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes.

Authors:  Erwin G Zoetendal; Kaouther Ben-Amor; Hermie J M Harmsen; Frits Schut; Antoon D L Akkermans; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

8.  Molecular inventory of faecal microflora in patients with Crohn's disease.

Authors:  Irène Mangin; Régis Bonnet; Philippe Seksik; Lionel Rigottier-Gois; Malène Sutren; Yoram Bouhnik; Christel Neut; Matthew D Collins; Jean-Frédéric Colombel; Philippe Marteau; Joël Doré
Journal:  FEMS Microbiol Ecol       Date:  2004-10-01       Impact factor: 4.194

9.  Flow sorting of microorganisms for molecular analysis.

Authors:  G Wallner; B Fuchs; S Spring; W Beisker; R Amann
Journal:  Appl Environ Microbiol       Date:  1997-11       Impact factor: 4.792

10.  Enumeration of Bacteroides species in human faeces by fluorescent in situ hybridisation combined with flow cytometry using 16S rRNA probes.

Authors:  Lionel Rigottier-Gois; Violaine Rochet; Nathalie Garrec; Antonia Suau; Joël Doré
Journal:  Syst Appl Microbiol       Date:  2003-03       Impact factor: 4.022
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  73 in total

1.  Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics.

Authors:  Lorena Ruiz; Aldert Zomer; Mary O'Connell-Motherway; Douwe van Sinderen; Abelardo Margolles
Journal:  Appl Environ Microbiol       Date:  2011-12-09       Impact factor: 4.792

2.  Genotype is a stronger determinant than sex of the mouse gut microbiota.

Authors:  Amir Kovacs; Noa Ben-Jacob; Hanna Tayem; Eran Halperin; Fuad A Iraqi; Uri Gophna
Journal:  Microb Ecol       Date:  2010-12-23       Impact factor: 4.552

3.  Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach.

Authors:  C Manichanh; L Rigottier-Gois; E Bonnaud; K Gloux; E Pelletier; L Frangeul; R Nalin; C Jarrin; P Chardon; P Marteau; J Roca; J Dore
Journal:  Gut       Date:  2005-09-27       Impact factor: 23.059

4.  Development of a semiquantitative degenerate real-time pcr-based assay for estimation of numbers of butyryl-coenzyme A (CoA) CoA transferase genes in complex bacterial samples.

Authors:  Petra Louis; Harry J Flint
Journal:  Appl Environ Microbiol       Date:  2007-01-26       Impact factor: 4.792

Review 5.  Colonization and impact of disease and other factors on intestinal microbiota.

Authors:  Oscar C Thompson-Chagoyán; José Maldonado; Angel Gil
Journal:  Dig Dis Sci       Date:  2007-04-10       Impact factor: 3.199

6.  NOD2 prevents emergence of disease-predisposing microbiota.

Authors:  Thomas Secher; Sylvain Normand; Mathias Chamaillard
Journal:  Gut Microbes       Date:  2013-06-06

7.  Intestinal bacterial communities that produce active estrogen-like compounds enterodiol and enterolactone in humans.

Authors:  Thomas Clavel; Gemma Henderson; Carl-Alfred Alpert; Catherine Philippe; Lionel Rigottier-Gois; Joël Doré; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

8.  Correlations of fecal bacterial communities with age and living region for the elderly living in Bama, Guangxi, China.

Authors:  Liang Zhao; Xuewei Qiao; Jun Zhu; Xiaoying Zhang; Jingli Jiang; Yanling Hao; Fazheng Ren
Journal:  J Microbiol       Date:  2011-05-03       Impact factor: 3.422

9.  Geographical variation of human gut microbial composition.

Authors:  Taichi A Suzuki; Michael Worobey
Journal:  Biol Lett       Date:  2014-02-12       Impact factor: 3.703

10.  OPT-80 eliminates Clostridium difficile and is sparing of bacteroides species during treatment of C. difficile infection.

Authors:  Thomas J Louie; Judy Emery; Walter Krulicki; Brendan Byrne; Manuel Mah
Journal:  Antimicrob Agents Chemother       Date:  2008-10-27       Impact factor: 5.191
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