Literature DB >> 15998463

Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.

Steven L Salzberg1, Julie C Dunning Hotopp, Arthur L Delcher, Mihai Pop, Douglas R Smith, Michael B Eisen, William C Nelson.   

Abstract

A correction to Serendipitous discovery of Wolbachia genomes in multiple Drosophila species by SL Salzberg, JC Dunning Hotopp, AL Delcher, M Pop, DR Smith, MB Eisen and WC Nelson. Genome Biology 2005, 6:R23.

Entities:  

Mesh:

Year:  2005        PMID: 15998463      PMCID: PMC1175986          DOI: 10.1186/gb-2005-6-7-402

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


After the publication of this work [1], other researchers independently discovered that some of the data deposited in the NCBI Trace Archive was labeled erroneously. In particular, the sequencing center responsible for two of the Drosophila genome projects (Agencourt Biosciences) mistakenly deposited 20,000 sequences from D. ananassae and labeled them as D. mojavensis. The center recently corrected the mistake by removing the mislabeled sequences from the Trace Archive. We then searched through the newly updated D. mojavensis sequences for the 114 Wolbachia sequences that we had originally reported, and found that all had been removed. Thus our article should be corrected to report that new Wolbachia genome sequences were discovered in D. ananassae and D. simulans, but not in D. mojavensis. While searching the Trace Archive to verify this correction, however, one of us (S.L.S.) found that the traces for a new fly sequencing project, that of D. willistoni, had just been deposited. On searching the D. willistoni traces, a substantial Wolbachia infection in this species was discovered and 2,291 sequences belonging to Wolbachia were found. They were assembled into 485 contigs using the comparative assembler AMOS-Cmp [2] and the methods described in [1]. These sequences and assemblies are freely available for download from [3].
  2 in total

1.  Comparative genome assembly.

Authors:  Mihai Pop; Adam Phillippy; Arthur L Delcher; Steven L Salzberg
Journal:  Brief Bioinform       Date:  2004-09       Impact factor: 11.622

2.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.

Authors:  Steven L Salzberg; Julie C Dunning Hotopp; Arthur L Delcher; Mihai Pop; Douglas R Smith; Michael B Eisen; William C Nelson
Journal:  Genome Biol       Date:  2005-02-22       Impact factor: 13.583

  2 in total
  11 in total

1.  Heritable endosymbionts of Drosophila.

Authors:  Mariana Mateos; Sergio J Castrezana; Becky J Nankivell; Anne M Estes; Therese A Markow; Nancy A Moran
Journal:  Genetics       Date:  2006-06-18       Impact factor: 4.562

2.  Comparative plant genomics resources at PlantGDB.

Authors:  Qunfeng Dong; Carolyn J Lawrence; Shannon D Schlueter; Matthew D Wilkerson; Stefan Kurtz; Carol Lushbough; Volker Brendel
Journal:  Plant Physiol       Date:  2005-10       Impact factor: 8.340

3.  Genomic features of a bumble bee symbiont reflect its host environment.

Authors:  Vincent G Martinson; Tanja Magoc; Hauke Koch; Steven L Salzberg; Nancy A Moran
Journal:  Appl Environ Microbiol       Date:  2014-04-18       Impact factor: 4.792

4.  The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans.

Authors:  Lisa Klasson; Joakim Westberg; Panagiotis Sapountzis; Kristina Näslund; Ylva Lutnaes; Alistair C Darby; Zoe Veneti; Lanming Chen; Henk R Braig; Roger Garrett; Kostas Bourtzis; Siv G E Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

5.  Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont.

Authors:  Timothy Driscoll; Joseph J Gillespie; Eric K Nordberg; Abdu F Azad; Bruno W Sobral
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

6.  Phylogenetic relationships of the Wolbachia of nematodes and arthropods.

Authors:  Katelyn Fenn; Claire Conlon; Martin Jones; Michael A Quail; Nancy E Holroyd; Julian Parkhill; Mark Blaxter
Journal:  PLoS Pathog       Date:  2006-10       Impact factor: 6.823

7.  The future of DNA sequence archiving.

Authors:  Guy Cochrane; Charles E Cook; Ewan Birney
Journal:  Gigascience       Date:  2012-07-12       Impact factor: 6.524

8.  New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria.

Authors:  Panagiotis Ioannidis; Julie C Dunning Hotopp; Panagiotis Sapountzis; Stefanos Siozios; Georgios Tsiamis; Seth R Bordenstein; Laura Baldo; John H Werren; Kostas Bourtzis
Journal:  BMC Genomics       Date:  2007-06-20       Impact factor: 3.969

9.  Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont.

Authors:  Richard Cordaux; Samuel Pichon; Alison Ling; Philippe Pérez; Carine Delaunay; Fabrice Vavre; Didier Bouchon; Pierre Grève
Journal:  Mol Biol Evol       Date:  2008-06-17       Impact factor: 16.240

10.  More than fishing in the dark: PCR of a dispersed sequence produces simple but ultrasensitive Wolbachia detection.

Authors:  Daniela I Schneider; Lisa Klasson; Anders E Lind; Wolfgang J Miller
Journal:  BMC Microbiol       Date:  2014-05-12       Impact factor: 3.605

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.