Literature DB >> 15992750

Further support for the clades obtained by multiple molecular phylogenies in the acanthomorph bush.

Agnès Dettai1, Guillaume Lecointre.   

Abstract

Several recent molecular studies have begun to clarify the phylogeny of Acanthomorpha (Teleostei), a wide clade of teleost fishes. However, different molecular datasets do not agree on a single history of the taxa, probably because of marker-specific biases. The 'total-evidence' approach maximizes character congruence, but may be biased by a single robust, but non-phylogenetic constraint from one dataset. We have therefore taken the approach to analyse also each dataset separately prior to their combination, and detect repeated groups: signal common to markers is more probably a reflection of shared ancestry than marker-specific signal. Partial sequences (678+527 base pairs) of exons of the MLL gene (Mixed Lineage Leukaemia-like) gene were used, as well as the datasets of Chen et al. (ribosomal 28S, rhodopsin gene, mitochondrial 12S and 16S). Most of the repeated clades of Chen et al. are supported by the new dataset. Some new groups were repeatedly found: a Scarus-Labrus group (clade M), the presence of Gasterosteidae as a sister taxon or within the clade Zoarcoidei-Cottoidei (clade Is), Polymixia as a sister-group to the clade Zeoidei-Gadiformes (clade O), the clade Q grouping Mugiloidei, Cichlidae, Atherinomorpha, Blennioidei and Gobiesocoidei; and the interesting clade N, reducing potential sister-groups to Tetraodontiformes to either Caproidei, Lophiiformes, Acanthuroidei, Drepanidae, Chaetodontidae, and Pomacanthidae.

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Year:  2005        PMID: 15992750     DOI: 10.1016/j.crvi.2005.04.002

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  25 in total

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Journal:  J Mol Evol       Date:  2006-11-02       Impact factor: 2.395

3.  Phylogenomic analysis resolves the formerly intractable adaptive diversification of the endemic clade of east Asian Cyprinidae (Cypriniformes).

Authors:  Wenjing Tao; Ming Zou; Xuzhen Wang; Xiaoni Gan; Richard L Mayden; Shunping He
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4.  Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective.

Authors:  Masaki Miya; Theodore W Pietsch; James W Orr; Rachel J Arnold; Takashi P Satoh; Andrew M Shedlock; Hsuan-Ching Ho; Mitsuomi Shimazaki; Mamoru Yabe; Mutsumi Nishida
Journal:  BMC Evol Biol       Date:  2010-02-23       Impact factor: 3.260

5.  Are flatfishes (Pleuronectiformes) monophyletic?

Authors:  Matthew A Campbell; Wei-Jen Chen; J Andrés López
Journal:  Mol Phylogenet Evol       Date:  2013-07-19       Impact factor: 4.286

6.  Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii).

Authors:  Ming Zou; Baocheng Guo; Wenjing Tao; Gloria Arratia; Shunping He
Journal:  Sci Rep       Date:  2012-09-18       Impact factor: 4.379

7.  A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs).

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Journal:  PLoS One       Date:  2013-06-18       Impact factor: 3.240

8.  The tree of life and a new classification of bony fishes.

Authors:  Ricardo Betancur-R; Richard E Broughton; Edward O Wiley; Kent Carpenter; J Andrés López; Chenhong Li; Nancy I Holcroft; Dahiana Arcila; Millicent Sanciangco; James C Cureton Ii; Feifei Zhang; Thaddaeus Buser; Matthew A Campbell; Jesus A Ballesteros; Adela Roa-Varon; Stuart Willis; W Calvin Borden; Thaine Rowley; Paulette C Reneau; Daniel J Hough; Guoqing Lu; Terry Grande; Gloria Arratia; Guillermo Ortí
Journal:  PLoS Curr       Date:  2013-04-18

9.  Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of new world species.

Authors:  José Julián Tavera; Arturo Acero P; Eduardo F Balart; Giacomo Bernardi
Journal:  BMC Evol Biol       Date:  2012-04-26       Impact factor: 3.260

10.  On the origin and trigger of the notothenioid adaptive radiation.

Authors:  Michael Matschiner; Reinhold Hanel; Walter Salzburger
Journal:  PLoS One       Date:  2011-04-18       Impact factor: 3.240

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