Literature DB >> 15987891

A scalable, GFP-based pipeline for membrane protein overexpression screening and purification.

David Drew1, Dirk-Jan Slotboom, Giulia Friso, Torsten Reda, Pierre Genevaux, Mikaela Rapp, Nadja M Meindl-Beinker, Wietske Lambert, Mirjam Lerch, Daniel O Daley, Klaas-Jan Van Wijk, Judy Hirst, Edmund Kunji, Jan-Willem De Gier.   

Abstract

We describe a generic, GFP-based pipeline for membrane protein overexpression and purification in Escherichia coli. We exemplify the use of the pipeline by the identification and characterization of E. coli YedZ, a new, membrane-integral flavocytochrome. The approach is scalable and suitable for high-throughput applications. The GFP-based pipeline will facilitate the characterization of the E. coli membrane proteome and serves as an important reference for the characterization of other membrane proteomes.

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Year:  2005        PMID: 15987891      PMCID: PMC2279312          DOI: 10.1110/ps.051466205

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  15 in total

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2.  Biochemical changes in liver associated with kwashiorkor.

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3.  Global topology analysis of the Escherichia coli inner membrane proteome.

Authors:  Daniel O Daley; Mikaela Rapp; Erik Granseth; Karin Melén; David Drew; Gunnar von Heijne
Journal:  Science       Date:  2005-05-27       Impact factor: 47.728

4.  Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms.

Authors:  E Wallin; G von Heijne
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

5.  Identification of a cytochrome b-type NAD(P)H oxidoreductase ubiquitously expressed in human cells.

Authors:  H Zhu; H Qiu; H W Yoon; S Huang; H F Bunn
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  Green fluorescent protein as an indicator to monitor membrane protein overexpression in Escherichia coli.

Authors:  D E Drew; G von Heijne; P Nordlund; J W de Gier
Journal:  FEBS Lett       Date:  2001-10-26       Impact factor: 4.124

7.  Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  J Gobom; E Nordhoff; E Mirgorodskaya; R Ekman; P Roepstorff
Journal:  J Mass Spectrom       Date:  1999-02       Impact factor: 1.982

8.  Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis.

Authors:  David Drew; Dan Sjöstrand; Johan Nilsson; Thomas Urbig; Chen-ni Chin; Jan-Willem de Gier; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

9.  Structural and biochemical identification of a novel bacterial oxidoreductase.

Authors:  Lodovica Loschi; Stephen J Brokx; Tanya L Hills; Glen Zhang; Michela G Bertero; Andrew L Lovering; Joel H Weiner; Natalie C J Strynadka
Journal:  J Biol Chem       Date:  2004-09-07       Impact factor: 5.157

10.  Synthesis and bacterial expression of a gene encoding the heme domain of assimilatory nitrate reductase.

Authors:  Michael J Barber; Shawn K Desai; Christopher C Marohnic; Hector H Hernandez; Veronica V Pollock
Journal:  Arch Biochem Biophys       Date:  2002-06-01       Impact factor: 4.013

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  56 in total

1.  Combinatorial method for overexpression of membrane proteins in Escherichia coli.

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Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

2.  Restrained expression, a method to overproduce toxic membrane proteins by exploiting operator-repressor interactions.

Authors:  Anoop Narayanan; Marc Ridilla; Dinesh A Yernool
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

3.  Engineering membrane protein overproduction in Escherichia coli.

Authors:  Daniel Martinez Molina; Tobias Cornvik; Said Eshaghi; Jesper Z Haeggström; Pär Nordlund; Marina Ignatushchenko Sabet
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

4.  A green fluorescent protein screen for identification of well-expressed membrane proteins from a cohort of extremophilic organisms.

Authors:  Justus Hammon; Dinesh V Palanivelu; Joy Chen; Chintan Patel; Daniel L Minor
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

5.  Fluorescent probe for high-throughput screening of membrane protein expression.

Authors:  A E Backmark; N Olivier; A Snijder; E Gordon; N Dekker; A D Ferguson
Journal:  Protein Sci       Date:  2013-07-03       Impact factor: 6.725

Review 6.  Genome engineering.

Authors:  Peter A Carr; George M Church
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

7.  Tuning Escherichia coli for membrane protein overexpression.

Authors:  Samuel Wagner; Mirjam M Klepsch; Susan Schlegel; Ansgar Appel; Roger Draheim; Michael Tarry; Martin Högbom; Klaas J van Wijk; Dirk J Slotboom; Jan O Persson; Jan-Willem de Gier
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-16       Impact factor: 11.205

8.  Effect of detergents on the thermal behavior of elastin-like polypeptides.

Authors:  Arjun Thapa; Wei Han; Robin H Simons; Ashutosh Chilkoti; Eva Y Chi; Gabriel P López
Journal:  Biopolymers       Date:  2013-01       Impact factor: 2.505

9.  A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency.

Authors:  Stephen S Marshall; Michiel J M Niesen; Axel Müller; Katrin Tiemann; Shyam M Saladi; Rachel P Galimidi; Bin Zhang; William M Clemons; Thomas F Miller
Journal:  Cell Rep       Date:  2016-08-11       Impact factor: 9.423

10.  GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae.

Authors:  David Drew; Simon Newstead; Yo Sonoda; Hyun Kim; Gunnar von Heijne; So Iwata
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

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