| Literature DB >> 15987507 |
Alessandro Grapputo1, Tomi Kumpulainen, Johanna Mappes, Silja Parri.
Abstract
BACKGROUND: Despite the two-fold cost of sex, most of the higher animals reproduce sexually. The advantage of sex has been suggested to be its ability, through recombination, to generate greater genetic diversity than asexuality, thus enhancing adaptation in a changing environment. We studied the genetic diversity and the population structure of three closely related species of bag worm moths: two strictly sexual (Dahlica charlottae and Siederia rupicolella) and one strictly asexual (D. fennicella). These species compete for the same resources and share the same parasitoids.Entities:
Mesh:
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Year: 2005 PMID: 15987507 PMCID: PMC1185528 DOI: 10.1186/1472-6785-5-5
Source DB: PubMed Journal: BMC Ecol ISSN: 1472-6785 Impact factor: 2.964
Isoenzymatic loci scored for Siederia rupicolella, Dahlica charlottae and D. fennicella. Recipes for buffers used are found at
| Enzyme | E.C.* | Locus | Buffer |
| - Isocitrate Dehydrogenase | 1.1.1.42 | Phosphate 0.02 M pH 7.0 | |
| - Diaphorase | 1.1.1.40 | Phosphate 0.02 M pH 7.0 | |
| - Glucose-6-Phosphate Dehydrogenase | 1.1.1.49 | Tris-Maleate-EDTA- MgCl2 0.2 M pH 7.8 | |
| - 6-Phosphogluconate Dehydrogenase | 1.1.1.44 | Tris-Maleate-EDTA- MgCl2 0.2 M pH 7.8 | |
| - Aspartate Aminotransferase | 2.6.1.1 | Citrate Phosphate 0.04 M pH 6.4 | |
| - Phosphoglucomutase | 5.4.2.2 | Tris-Maleate-EDTA- MgCl2 0.2 M pH 7.8 | |
| - Malate Dehydrogenase NADP+ | 1.1.1.40 | Tris Maleate 0.1 M pH 5.3 | |
| - Malate Dehydrogenase | 1.1.1.37 | Tris-Maleate-EDTA- MgCl2 0.2 M pH 7.8 | |
| - Glucose-6-Phosphate Isomerase | 5.3.1.9 | Tris-Maleate-EDTA- MgCl2 0.2 M pH 7.8 | |
| - Fumarate Hydratase | 4.2.1.2 | Tris Maleate 0.1 M pH 5.3 |
* Enzyme Commission Number
Sample sizes, average number of alleles per locus, allelic richness, proportion of different genotypes (k), Simpson's index (D) and Evenness (E) (D and E calculated for asexual D. fennicella only), observed heterozygosity (Ho), gene diversity (Hs), and FIS are presented for each population of each sexual species. In the last column are presented the averaged values per species and the FST values among populations.
| N | 18 | 11 | 9 | 14 | 10 | 12 | 16 | 14 | 7 | 7 | 14 | 9 | 13 | 11 | 11.786 | ||||||
| N. alleles ± (S.E.) | 3.846 (1.039) | 3.077 (0.485) | 2.692 (0.537) | 2.923 (0.611) | 3.000 (0.553) | 3.154 (0.761) | 3.692 (0.888) | 3.077 (0.564) | 2.154 (0.281) | 2.692 (0.511) | 3.462 (0.719) | 3.000 (0.707) | 3.231 (0.649) | 3.538 (0.860) | 5.6154 (1.4485) | ||||||
| Allelic richness | 3.029 | 2.871 | 2.543 | 2.593 | 2.765 | 2.790 | 3.049 | 2.702 | 2.119 | 2.582 | 2.877 | 2.804 | 2.884 | 3.114 | 2.766 | ||||||
| k | 1.000 | 1.000 | 0.889 | 0.929 | 1.000 | 1.000 | 1.000 | 0.786 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 0.972 | ||||||
| Ho ± (S.E.) | 0.297 (0.077) | 0.307 (0.093) | 0.249 (0.087) | 0.295 (0.095) | 0.308 (0.081) | 0.245 (0.075) | 0.266 (0.070) | 0.251 (0.070) | 0.374 (0.109) | 0.393 (0.112) | 0.248 (0.063) | 0.274 (0.065) | 0.284 (0.087) | 0.285 (0.076) | 0.2955 (0.1046) | ||||||
| Hs ± (S.E.) | 0.469 (0.107) | 0.548 (0.086) | 0.451 (0.102) | 0.437 (0.114) | 0.508 (0.110) | 0.447 (0.107) | 0.505 (0.127) | 0.502 (0.093) | 0.405 (0.087) | 0.425 (0.102) | 0.524 (0.080) | 0.468 (0.121) | 0.528 (0.099) | 0.558 (0.093) | 0.4851 (0.0841) | ||||||
| 0.168 (<0.001) | 0.154 (<0.001) | 0.1530 (<0.001) | |||||||||||||||||||
| N | 10 | 14 | 10 | 9 | 14 | 17 | 26 | 11 | 11 | 13.556 | |||||||||||
| N. alleles ± (S.E.) | 2.846 (0.337) | 3.000 (0.358) | 3.000 (0.340) | 2.385 (0.368) | 3.231 (0.426) | 3.385 (0.549) | 3.692 (0.634) | 2.538 (0.332) | 2.308 (0.208) | 2.932 (0.815) | |||||||||||
| Allelic richness | 2.742 | 2.794 | 2.783 | 2.275 | 2.914 | 2.988 | 3.001 | 2.480 | 2.198 | 2.686 | |||||||||||
| k | 1.000 | 0.929 | 1.000 | 1.000 | 0.929 | 1.000 | 1.000 | 0.909 | 0.909 | 0.964 | |||||||||||
| Ho ± (S.E.) | 0.364 (0.084) | 0.327 (0.086) | 0.247 (0.063) | 0.253 (0.071) | 0.312 (0.084) | 0.343 (0.092) | 0.266 (0.068) | 0.303 (0.096) | 0.192 (0.073) | 0.290 (0.072) | |||||||||||
| Hs ± (S.E.) | 0.534 (0.057) | 0.512 (0.072) | 0.507 (0.057) | 0.380 (0.073) | 0.492 (0.062) | 0.526 (0.069) | 0.501 (0.066) | 0.477 (0.058) | 0.399 (0.066) | 0.481 (0.049) | |||||||||||
| 0.114 (<0.001) | 0.116 (<0.001) | 0.101 (>0.001) | |||||||||||||||||||
| N | 9 | 13 | 17 | 18 | 21 | 8 | 14.333 | ||||||||||||||
| N. alleles ± (S.E.) | 1.923 (0.211) | 2.692 (0.365) | 2.615 (0.241) | 2.385 (0.350) | 2.769 (0.411) | 1.692 (0.208) | 3.615 (0.488) | ||||||||||||||
| Allelic richness | 1.692 | 2.123 | 2.126 | 1.955 | 2.125 | 1.611 | 1.939 | ||||||||||||||
| k | 1 | 1 | 0.824 | 0.778 | 0.667 | 0.500 | 0.795 | ||||||||||||||
| D | 9 | 13 | 9.966 | 11.571 | 10.756 | 3.556 | 9.642 | ||||||||||||||
| E | 1 | 1 | 0.712 | 0.827 | 0.964 | 0.889 | 0.899 | ||||||||||||||
| Ho ± (S.E.) | 0.376 (0.117) | 0.383 (0.115) | 0.363 (0.122) | 0.443 (0.122) | 0.436 (0.133) | 0.375 (0.130) | 0.397 (0.116) | ||||||||||||||
| Hs ± (S.E.) | 0.308 (0.069) | 0.458 (0.067) | 0.448 (0.058) | 0.379 (0.0793) | 0.466 (0.066) | 0.279 (0.076) | 0.390 (0.033) | ||||||||||||||
| 0.213 (<0.001) | 0.213 (<0.001) | ||||||||||||||||||||
FIS values and frequency of null alleles for each population of the three species at each locus. Null alleles frequencies (a*) were calculated with the method of Brookfield [38].
| All | ||||||||||||||||
| -0.278 | NA | 0.141 | 0.721 | 0.619 | 0.115 | 0.256 | 1 | 0.368 | 1 | 1 | 0.211 | 0.011 | 0.367 | |||
| a* | 0 | 0 | 0.027 | 0.257 | 0.215 | 0.038 | 0.092 | 0.363 | 0.116 | 0.172 | 0.095 | 0.042 | 0 | |||
| -0.653 | NA | -0.297 | 0.773 | 0.828 | -0.071 | 0.877 | 1 | 0.429 | 1 | 1 | 0.100 | 0.279 | 0.441 | |||
| a* | 0 | 0 | 0 | 0.202 | 0.265 | 0 | 0.348 | 0.410 | 0.145 | 0.346 | 0.284 | 0.014 | 0.094 | |||
| -0.556 | 1 | 0.276 | 0.000 | 0.636 | -0.297 | 0.429 | 1 | 1 | 1 | NA | -0.143 | 0.689 | 0.448 | |||
| a* | 0 | 0.165 | 0.069 | 0 | 0.130 | 0 | 0.133 | 0.331 | 0.308 | 0.417 | 0 | 0 | 0.258 | |||
| 0.034 | NA | -1 | 0.840 | 0.576 | -0.243 | 0.425 | 1 | NA | 1 | NA | 0.407 | 0.278 | 0.326 | |||
| a* | 0 | 0 | 0 | 0.243 | 0.214 | 0 | 0.146 | 0.252 | 0 | 0.417 | 0 | 0.092 | 0.097 | |||
| -0.292 | NA | -0.125 | 0.385 | 0.717 | -0.021 | 0.217 | 1 | 1 | 0.509 | 0 | 1 | 0.223 | 0.393 | |||
| a* | 0 | 0 | 0 | 0.128 | 0.271 | 0 | 0.070 | 0.383 | 0.153 | 0.169 | 0 | 0.319 | 0.067 | |||
| 0.165 | NA | -0.100 | 0.681 | 0.701 | 0.079 | 0.133 | 1 | 1 | 1 | 1 | 0.429 | 0.471 | 0.481 | |||
| a* | 0.044 | 0 | 0 | 0.215 | 0.231 | 0.014 | 0.038 | 0.379 | 0.133 | 0.217 | 0.133 | 0.089 | 0.186 | |||
| 0.167 | NA | -0.189 | 0.605 | 0.683 | 0.025 | 0.534 | 1 | 0.659 | 1 | 0 | 0.556 | 0.544 | 0.474 | |||
| a* | 0.045 | 0 | 0 | 0.220 | 0.285 | 0 | 0.221 | 0.418 | 0.095 | 0.105 | 0 | 0.173 | 0.229 | |||
| -0.241 | NA | 0.226 | 0.658 | 0.506 | 0.158 | 0.477 | 1 | 0.871 | 1 | 1 | -0.294 | 0.577 | 0.501 | |||
| a* | 0 | 0 | 0.049 | 0.105 | 0.139 | 0.052 | 0.195 | 0.384 | 0.294 | 0.290 | 0.333 | 0 | 0.223 | |||
| -1 | NA | 0 | 0 | 0.091 | -1 | 0.143 | 1 | -0.200 | 1 | 0.750 | -1 | -0.714 | -0.113 | |||
| a* | 0 | 0 | 0 | 0 | 0.006 | 0 | 0.021 | 0.2899 | 0 | 0.1967 | 0.238 | 0 | 0 | |||
| 0.615 | NA | -0.091 | -0.333 | -0.161 | -0.333 | 0.300 | 1 | 0.647 | NA | 1 | -0.667 | -0.448 | 0.076 | |||
| a* | 0.152 | 0 | 0 | 0 | 0 | 0 | 0.059 | 0.3725 | 0.158 | 0 | 0.197 | 0 | 0 | |||
| 0.393 | -0.040 | 0.189 | 0.589 | 0.482 | -0.026 | 0.816 | 1 | 0.662 | 0.769 | 1 | 0.154 | 0.564 | 0.527 | |||
| a* | 0.121 | 0 | 0.047 | 0.223 | 0.179 | 0 | 0.338 | 0.351 | 0.191 | 0.178 | 0.332 | 0.030 | 0.133 | |||
| -0.333 | NA | -0.200 | 0.632 | 0.575 | 0.127 | 0.744 | 1 | -0.067 | 1 | NA | -0.091 | 0.571 | 0.415 | |||
| a* | 0 | 0 | 0 | 0.211 | 0.223 | 0.029 | 0.315 | 0.331 | 0 | 0.165 | 0 | 0 | 0.220 | |||
| 0.208 | NA | 0.294 | 0.222 | 0.177 | -0.200 | 0.866 | 1 | 1 | 1 | 1 | 0.353 | 0.392 | 0.463 | |||
| a* | 0.066 | 0 | 0.061 | 0.073 | 0.048 | 0 | 0.311 | 0.362 | 0.327 | 0.321 | 0.124 | 0.103 | 0.155 | |||
| -0.135 | 1 | 0.438 | 0.615 | 0.870 | 0.067 | 0.512 | 1 | 0 | 1 | 1 | 0.043 | 0.681 | 0.489 | |||
| a* | 0 | 0.142 | 0.130 | 0.232 | 0.335 | 0.009 | 0.195 | 0.284 | 0 | 0.142 | 0.332 | 0 | 0.289 | |||
| -0.800 | NA | 0.250 | 0.554 | 0.419 | -0.268 | 0.534 | 1 | 0.442 | 0.852 | 0.542 | 0.351 | -0.184 | 0.318 | |||
| a* | 0 | 0 | 0.067 | 0.198 | 0.091 | 0 | 0.185 | 0.296 | 0.159 | 0.319 | 0.190 | 0.096 | 0 | |||
| -0.307 | NA | 0.559 | 0.458 | 0.780 | -0.279 | -0.078 | 1 | 0.579 | 0.882 | NA | 0.100 | 0.242 | 0.361 | |||
| a* | 0 | 0 | 0.192 | 0.165 | 0.178 | 0 | 0 | 0.413 | 0.216 | 0.330 | 0 | 0.014 | 0.080 | |||
| -0.091 | 0 | 0.617 | 0.664 | 1 | 0.338 | 0.820 | 1 | 0.471 | 1 | 0 | -0.207 | -0.154 | 0.513 | |||
| a* | 0 | 0 | 0.189 | 0.223 | 0.390 | 0.120 | 0.269 | 0.398 | 0.148 | 0.296 | 0 | 0 | 0 | |||
| 0.067 | NA | 0.368 | -0.091 | 0.573 | -0.085 | -0.067 | 1 | 0.818 | NA | NA | 0.478 | 0.190 | 0.333 | |||
| a* | 0 | 0 | 0.087 | 0 | 0.172 | 0 | 0 | 0.257 | 0.283 | 0 | 0 | 0.137 | 0.045 | |||
| 0.007 | NA | -0.132 | 0.480 | 0.623 | -0.226 | 0.182 | 1 | 0.196 | 1 | 1 | -0.176 | 0.507 | 0.367 | |||
| a* | 0 | 0 | 0 | 0.178 | 0.158 | 0 | 0.063 | 0.364 | 0.033 | 0.333 | 0.290 | 0 | 0.170 | |||
| -0.333 | 1 | 0.364 | 0.202 | 0.615 | -0.200 | 0.813 | 1 | 0.509 | 0.652 | NA | 0.336 | -0.049 | 0.347 | |||
| a* | 0 | 0.172 | 0.111 | 0.072 | 0.251 | 0 | 0.299 | 0.386 | 0.177 | 0.088 | 0 | 0.096 | 0 | |||
| -0.090 | NA | -0.154 | 0.301 | 0.788 | 0.001 | 0.708 | 1 | 0.091 | 1 | 0.928 | -0.091 | 0.358 | 0.468 | |||
| a* | 0 | 0 | 0 | 0.085 | 0.321 | 0 | 0.303 | 0.393 | 0.018 | 0.316 | 0.316 | 0 | 0.132 | |||
| -0.800 | NA | -0.047 | 1 | 1 | -0.125 | 0.612 | 1 | -0.296 | 1 | 1 | -0.2000 | 0.474 | 0.366 | |||
| a* | 0 | 0 | 0 | 0.339 | 0.316 | 0 | 0.240 | 0.316 | 0 | 0.153 | 0.316 | 0 | 0.142 | |||
| 0.438 | NA | 0.217 | 0.091 | 1 | -0.524 | 0.680 | 1 | 0 | 1 | 1 | NA | -0.026 | 0.518 | |||
| a* | 0.130 | 0 | 0.054 | 0.014 | 0.332 | 0 | 0.225 | 0.373 | 0 | 0.301 | 0.332 | 0 | 0 | |||
| 0.304 | NA | -1 | 0 | -0.600 | -0.091 | 0.448 | 1 | NA | NA | NA | -1 | -1 | -0.222 | |||
| a* | 0.093 | 0 | 0 | 0 | 0 | 0 | 0.108 | 0.331 | 0 | 0 | 0 | NA | 0 | |||
| 0.268 | NA | -1 | 1 | 0.200 | 0.050 | 0.553 | 1 | 0.351 | 1 | 1 | -1 | -0.581 | 0.145 | |||
| a* | 0.110 | 0 | 0 | 0.321 | 0.000 | 0.058 | 0.301 | 0.381 | 0.256 | 0.299 | 0 | 0 | 0 | |||
| 0.657 | NA | -1 | 1 | -0.333 | 0.185 | 0.780 | 1 | 0.840 | 1 | NA | -0.800 | -1 | 0.208 | |||
| a* | 0.058 | 0 | 0 | 0.333 | 0.067 | 0.008 | 0.205 | 0.279 | 0.067 | 0.233 | 0.172 | 0 | 0 | |||
| -0.732 | NA | -1 | 1 | -0.308 | -0.244 | 0.532 | 1 | NA | -0.097 | NA | -0.846 | -1 | -0.168 | |||
| a* | 0 | 0 | 0 | 0.095 | 0 | 0 | 0.207 | 0.436 | 0 | 0 | 0 | 0 | 0 | |||
| 0.650 | NA | -1 | 0.840 | -0.772 | -0.159 | 0.162 | 1 | 1 | 1 | NA | -1 | -1 | 0.057 | |||
| a* | 0.218 | 0 | 0 | 0.185 | 0 | 0 | 0.052 | 0.393 | 0.329 | 0.329 | 0 | 0 | 0 | |||
| 0.391 | NA | -1 | NA | NA | -1 | -0.029 | 1 | NA | NA | NA | -1 | -1 | -0.345 | |||
| a* | 0.091 | 0 | 0 | 0 | 0 | 0 | 0 | 0.347 | 0 | 0 | 0 | 0 | 0 | |||
Figure 2Mean FST of each species and its 95% confidence interval obtained with bootstrap over loci. Asterisk indicates 5% significant level.
Figure 1Map of the sampling sites in central Finland.