Literature DB >> 15983419

Away from the edge II: in-house Se-SAS phasing with chromium radiation.

Hao Xu1, Cheng Yang, Lirong Chen, Irina A Kataeva, Wolfram Tempel, Doowon Lee, Jeff E Habel, Duong Nguyen, James W Pflugrath, Joseph D Ferrara, W Bryan Arendall, Jane S Richardson, David C Richardson, Zhi Jie Liu, M Gary Newton, John P Rose, Bi Cheng Wang.   

Abstract

Recently, the demands of high-throughput macromolecular crystallography have driven continuous improvements in phasing methods, data-collection protocols and many other technologies. Single-wavelength anomalous scattering (SAS) phasing with chromium X-ray radiation opens a new possibility for phasing a protein with data collected in-house and has led to several successful examples of de novo structure solution using only weak anomalous scatterers such as sulfur. To further reduce data-collection time and make SAS phasing more robust, it is natural to combine selenomethionine-derivatized protein (SeMet protein) with Cr Kalpha radiation to take advantage of the larger anomalous scattering signal from selenium (f'' = 2.28 e(-)) compared with sulfur (f'' = 1.14 e(-)). As reported herein, the crystal structure of a putative chorismate mutase from Clostridium thermocellum was determined using Se-SAS with Cr Kalpha radiation. Each protein molecule contains eight selenomethionine residues in 148 amino-acid residues, providing a calculated Bijvoet ratio of about 3.5% at the Cr Kalpha wavelength. A single data set to 2.2 A resolution with approximately ninefold redundancy was collected using an imaging-plate detector coupled with a Cr source. Structure solution, refinement and deposition to the Protein Data Bank were performed within 9 h of the availability of the scaled diffraction data. The procedure used here is applicable to many other proteins and promises to become a routine pathway for in-house high-throughput crystallography.

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Year:  2005        PMID: 15983419     DOI: 10.1107/S0907444905010644

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  5 in total

1.  Prediction of the structure of symmetrical protein assemblies.

Authors:  Ingemar André; Philip Bradley; Chu Wang; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-31       Impact factor: 11.205

2.  Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome.

Authors:  Andrei Korostelev; Sergei Trakhanov; Haruichi Asahara; Martin Laurberg; Laura Lancaster; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-16       Impact factor: 11.205

3.  Introduction to phasing.

Authors:  Garry L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  The three-dimensional structure of the cytoplasmic domains of EpsF from the type 2 secretion system of Vibrio cholerae.

Authors:  Jan Abendroth; Daniel D Mitchell; Konstantin V Korotkov; Tanya L Johnson; Allison Kreger; Maria Sandkvist; Wim G J Hol
Journal:  J Struct Biol       Date:  2009-03-24       Impact factor: 2.867

5.  Preliminary X-ray crystallographic analysis of the secreted chorismate mutase from Mycobacterium tuberculosis: a tricky crystallization problem solved.

Authors:  Ute Krengel; Raja Dey; Severin Sasso; Mats Okvist; Chandra Ramakrishnan; Peter Kast
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-04-12
  5 in total

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