Literature DB >> 15983409

Evaluation of protein crystallization states based on texture information derived from greyscale images.

Kanako Saitoh1, Kuniaki Kawabata, Hajime Asama, Taketoshi Mishima, Mitsuaki Sugahara, Masashi Miyano.   

Abstract

In recent years, several projects have advanced research and development related to the automation of the protein crystallization process. However, evaluation of crystallization states has not yet been completely automated. In the usual crystallization process, researchers evaluate the protein crystallization growth states based on visual impressions and assign them a score over and over again. The method presented here automates this evaluation process. This method attempts to categorize the individual crystallization droplet images into five classes. The algorithm is comprised of pre-processing, feature extraction from images using texture analysis and a categorization process using linear discriminant analysis. The performance of this method has been evaluated by comparing the results obtained by using this method with the results from a human expert and the concordance rate was 90.6%.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15983409     DOI: 10.1107/S0907444905007948

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

2.  Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.

Authors:  Hitoshi Iino; Hisashi Naitow; Yuki Nakamura; Noriko Nakagawa; Yoshihiro Agari; Mayumi Kanagawa; Akio Ebihara; Akeo Shinkai; Mitsuaki Sugahara; Masashi Miyano; Nobuo Kamiya; Shigeyuki Yokoyama; Ken Hirotsu; Seiki Kuramitsu
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-30

3.  Real-Time Protein Crystallization Image Acquisition and Classification System.

Authors:  Madhav Sigdel; Marc L Pusey; Ramazan S Aygun
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

4.  Classification of crystallization outcomes using deep convolutional neural networks.

Authors:  Andrew E Bruno; Patrick Charbonneau; Janet Newman; Edward H Snell; David R So; Vincent Vanhoucke; Christopher J Watkins; Shawn Williams; Julie Wilson
Journal:  PLoS One       Date:  2018-06-20       Impact factor: 3.240

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.