Literature DB >> 1598214

Analysis of nonuniformity in intron phase distribution.

A Fedorov1, G Suboch, M Bujakov, L Fedorova.   

Abstract

The distribution of different intron groups with respect to phases has been analyzed. It has been established that group II introns and nuclear introns have a minimum frequency of phase 2 introns. Since the phase of introns is an extremely conservative measure the observed minimum reflects evolutionary processes. A sample of all known, group I introns was too small to provide a valid characteristic of their phase distribution. The findings observed for the unequal distribution of phases cannot be explained solely on the basis of the mobile properties of introns. One of the most likely explanations for this nonuniformity in the intron phase distribution is the process of exon shuffling. It is proposed that group II introns originated at the early stages of evolution and were involved in the process of exon shuffling.

Mesh:

Year:  1992        PMID: 1598214      PMCID: PMC312392          DOI: 10.1093/nar/20.10.2553

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

Review 1.  Comparative and functional anatomy of group II catalytic introns--a review.

Authors:  F Michel; K Umesono; H Ozeki
Journal:  Gene       Date:  1989-10-15       Impact factor: 3.688

2.  A general model for the evolution of nuclear pre-mRNA introns.

Authors:  D A Hickey; B F Benkel; S M Abukashawa
Journal:  J Theor Biol       Date:  1989-03-07       Impact factor: 2.691

Review 3.  Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review.

Authors:  T R Cech
Journal:  Gene       Date:  1988-12-20       Impact factor: 3.688

4.  Intron/exon structure of the chicken pyruvate kinase gene.

Authors:  N Lonberg; W Gilbert
Journal:  Cell       Date:  1985-01       Impact factor: 41.582

5.  Comparison of transfer RNA and ribosomal RNA intron splicing in the extreme thermophile and archaebacterium Desulfurococcus mobilis.

Authors:  J Kjems; J Jensen; T Olesen; R A Garrett
Journal:  Can J Microbiol       Date:  1989-01       Impact factor: 2.419

6.  Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes, and its implications.

Authors:  P Senapathy
Journal:  Proc Natl Acad Sci U S A       Date:  1986-04       Impact factor: 11.205

7.  The triosephosphate isomerase gene from maize: introns antedate the plant-animal divergence.

Authors:  M Marchionni; W Gilbert
Journal:  Cell       Date:  1986-07-04       Impact factor: 41.582

8.  Euglena gracilis chloroplast ribosomal protein operon: a new chloroplast gene for ribosomal protein L5 and description of a novel organelle intron category designated group III.

Authors:  D A Christopher; R B Hallick
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

9.  Intron-dependent evolution of chicken glyceraldehyde phosphate dehydrogenase gene.

Authors:  E M Stone; K N Rothblum; R J Schwartz
Journal:  Nature       Date:  1985 Feb 7-13       Impact factor: 49.962

10.  Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi.

Authors:  J C Edman; J A Kovacs; H Masur; D V Santi; H J Elwood; M L Sogin
Journal:  Nature       Date:  1988-08-11       Impact factor: 49.962

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  34 in total

1.  Can codon usage bias explain intron phase distributions and exon symmetry?

Authors:  A Ruvinsky; S T Eskesen; F N Eskesen; L D Hurst
Journal:  J Mol Evol       Date:  2005-01       Impact factor: 2.395

2.  Rates of intron loss and gain: implications for early eukaryotic evolution.

Authors:  Scott William Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-12       Impact factor: 11.205

3.  Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins.

Authors:  Maria Dulcetti Vibranovski; Noboru Jo Sakabe; Rodrigo Soares de Oliveira; Sandro José de Souza
Journal:  J Mol Evol       Date:  2005-07-18       Impact factor: 2.395

4.  The pattern of intron loss.

Authors:  Scott W Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-10       Impact factor: 11.205

5.  Intron-exon structures of eukaryotic model organisms.

Authors:  M Deutsch; M Long
Journal:  Nucleic Acids Res       Date:  1999-08-01       Impact factor: 16.971

6.  Relationship between "proto-splice sites" and intron phases: evidence from dicodon analysis.

Authors:  M Long; S J de Souza; C Rosenberg; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

7.  Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.

Authors:  A Rzhetsky; F J Ayala; L C Hsu; C Chang; A Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

8.  A gradient in the distribution of introns in eukaryotic genes.

Authors:  A Ruvinsky; W Ward
Journal:  J Mol Evol       Date:  2006-05-25       Impact factor: 2.395

9.  Alternative splicing acting as a bridge in evolution.

Authors:  Kemin Zhou; Asaf Salamov; Alan Kuo; Andrea L Aerts; Xiangyang Kong; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2015-10-30

10.  Intron phase correlations and the evolution of the intron/exon structure of genes.

Authors:  M Long; C Rosenberg; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

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