Literature DB >> 15979411

Mining the malaria transcriptome.

Manuel Llinás1, Hernando A del Portillo.   

Abstract

Malaria remains the most devastating parasitic disease worldwide, and is responsible each year for >500 million infections and between one million and two million deaths of children under five years of age. Plasmodium falciparum is the most prevalent and deadly malaria parasite of humans, and a huge amount of data about it is now publicly available following completion of its genome sequence, the complete transcriptome of its asexual blood stages and proteomic analyses of its different life stages. Thus, new computational approaches are needed to analyze these data to yield biologically meaningful results that can be validated experimentally and, hopefully, lead to alternative control strategies. In this article, we highlight the importance of new computational approaches in mining the malaria transcriptome of the intraerythrocytic developmental cycle of P. falciparum.

Entities:  

Mesh:

Year:  2005        PMID: 15979411     DOI: 10.1016/j.pt.2005.06.009

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  5 in total

1.  Discovering regulatory motifs in the Plasmodium genome using comparative genomics.

Authors:  Jie Wu; Douglas H Sieglaff; Joshua Gervin; Xiaohui S Xie
Journal:  Bioinformatics       Date:  2008-07-08       Impact factor: 6.937

2.  Six genes are preferentially transcribed by the circulating and sequestered forms of Plasmodium falciparum parasites that infect pregnant women.

Authors:  Susan E Francis; Vladislav A Malkov; Andrew V Oleinikov; Eddie Rossnagle; Jason P Wendler; Theonest K Mutabingwa; Michal Fried; Patrick E Duffy
Journal:  Infect Immun       Date:  2007-08-13       Impact factor: 3.441

3.  Identification of Plasmodium vivax proteins with potential role in invasion using sequence redundancy reduction and profile hidden Markov models.

Authors:  Daniel Restrepo-Montoya; David Becerra; Juan G Carvajal-Patiño; Alvaro Mongui; Luis F Niño; Manuel E Patarroyo; Manuel A Patarroyo
Journal:  PLoS One       Date:  2011-10-03       Impact factor: 3.240

Review 4.  Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?

Authors:  Lyn-Marie Birkholtz; Olivier Bastien; Gordon Wells; Delphine Grando; Fourie Joubert; Vinod Kasam; Marc Zimmermann; Philippe Ortet; Nicolas Jacq; Nadia Saïdani; Sylvaine Roy; Martin Hofmann-Apitius; Vincent Breton; Abraham I Louw; Eric Maréchal
Journal:  Malar J       Date:  2006-11-17       Impact factor: 2.979

5.  Host reticulocytes provide metabolic reservoirs that can be exploited by malaria parasites.

Authors:  Anubhav Srivastava; Darren J Creek; Krystal J Evans; David De Souza; Louis Schofield; Sylke Müller; Michael P Barrett; Malcolm J McConville; Andrew P Waters
Journal:  PLoS Pathog       Date:  2015-06-04       Impact factor: 6.823

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.