Literature DB >> 15979042

Analyzing functional similarity of protein sequences with discrete wavelet transform.

Zhi-ning Wen1, Ke-long Wang, Meng-long Li, Fu-sheng Nie, Yi Yang.   

Abstract

This paper applies discrete wavelet transform (DWT) with various protein substitution models to find functional similarity of proteins with low identity. A new metric, 'S' function, based on the DWT is proposed to measure the pair-wise similarity. We also develop a segmentation technique, combined with DWT, to handle long protein sequences. The results are compared with those using the pair-wise alignment and PSI-BLAST.

Mesh：

Year:  2005        PMID： 15979042     DOI： 10.1016/j.compbiolchem.2005.04.007

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN： 1476-9271            Impact factor:   2.877


  8 in total

1.  Prediction of the types of membrane proteins based on discrete wavelet transform and support vector machines.

Authors:  Jian-Ding Qiu; Xing-Yu Sun; Jian-Hua Huang; Ru-Ping Liang
Journal:  Protein J       Date:  2010-02       Impact factor: 2.371

2.  Prediction of mitochondrial proteins using discrete wavelet transform.

Authors:  Lin Jiang; Menglong Li; Zhining Wen; Kelong Wang; Yuanbo Diao
Journal:  Protein J       Date:  2006-06       Impact factor: 2.371

3.  Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.

Authors:  Mohamed Radhouene Aniba; Sophie Siguenza; Anne Friedrich; Frédéric Plewniak; Olivier Poch; Aron Marchler-Bauer; Julie Dawn Thompson
Journal:  Brief Bioinform       Date:  2008-10-29       Impact factor: 11.622

4.  Image correlation method for DNA sequence alignment.

Authors:  Millaray Curilem Saldías; Felipe Villarroel Sassarini; Carlos Muñoz Poblete; Asticio Vargas Vásquez; Iván Maureira Butler
Journal:  PLoS One       Date:  2012-06-27       Impact factor: 3.240

5.  A signal processing method to explore similarity in protein flexibility.

Authors:  Simina Vasilache; Nazanin Mirshahi; Soo-Yeon Ji; James Mottonen; Donald J Jacobs; Kayvan Najarian
Journal:  Adv Bioinformatics       Date:  2010-12-20

6.  Accurate prediction of subcellular location of apoptosis proteins combining Chou's PseAAC and PsePSSM based on wavelet denoising.

Authors:  Bin Yu; Shan Li; Wen-Ying Qiu; Cheng Chen; Rui-Xin Chen; Lei Wang; Ming-Hui Wang; Yan Zhang
Journal:  Oncotarget       Date:  2017-11-21

7.  Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families.

Authors:  R Vicedomini; J P Bouly; E Laine; A Falciatore; A Carbone
Journal:  Mol Biol Evol       Date:  2022-04-10       Impact factor: 8.800

8.  The EMILIN/Multimerin family.

Authors:  Alfonso Colombatti; Paola Spessotto; Roberto Doliana; Maurizio Mongiat; Giorgio Maria Bressan; Gennaro Esposito
Journal:  Front Immunol       Date:  2012-01-06       Impact factor: 7.561
  8 in total

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