Literature DB >> 15974660

Nuclear-magnetic-resonance shielding constants calculated by pseudospectral methods.

Yixiang Cao1, Michael D Beachy, Dale A Braden, Laurie Morrill, Murco N Ringnalda, Richard A Friesner.   

Abstract

We have developed an algorithm based upon pseudospectral (PS) ab initio electronic structure methods for evaluating nuclear magnetic shielding constants using gauge-including atomic orbitals (GIAOs) in the spin-restricted and spin-unrestricted formalisms of Hartree-Fock (HF) theory and density-functional theory (DFT). The nuclear magnetic shielding constants for both 1H and 13C calculated using PS methodology for 21 small molecules have absolute mean errors of less than 0.3 ppm in comparison with analytic integral results. CPU timing comparisons between PS methods and conventional methods carried out for seven large molecules ranging from 510 to 1285 basis functions demonstrate that the PS methods are an order of magnitude more efficient than the conventional methods. PS-HF was between 9 and 26 times faster than conventional integral technology, and PS-DFT (Becke three-parameter Lee-Yang-Parr) was between 6 and 21 times faster.

Entities:  

Year:  2005        PMID: 15974660     DOI: 10.1063/1.1924598

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  DFT study of 1-butyl-3-methylimidazolium salicylate: a third-generation ionic liquid.

Authors:  Stevan Armaković; Sanja J Armaković; Milan Vraneš; Aleksandar Tot; Slobodan Gadžurić
Journal:  J Mol Model       Date:  2015-08-30       Impact factor: 1.810

2.  Hydrogen bonding in the active site of ketosteroid isomerase: electronic inductive effects and hydrogen bond coupling.

Authors:  Philip Hanoian; Paul A Sigala; Daniel Herschlag; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

3.  Probing deoxysugar conformational preference: A comprehensive computational study investigating the effects of deoxygenation.

Authors:  Alison E Vickman; Nicola L B Pohl
Journal:  Carbohydr Res       Date:  2018-12-12       Impact factor: 2.104

4.  Theoretical investigation of loratadine reactivity in order to understand its degradation properties: DFT and MD study.

Authors:  Stevan Armaković; Sanja J Armaković; Biljana F Abramović
Journal:  J Mol Model       Date:  2016-09-17       Impact factor: 1.810

5.  Water in the active site of ketosteroid isomerase.

Authors:  Philip Hanoian; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2011-07-13       Impact factor: 3.162

6.  Challenging a paradigm: theoretical calculations of the protonation state of the Cys25-His159 catalytic diad in free papain.

Authors:  Michael Shokhen; Netaly Khazanov; Amnon Albeck
Journal:  Proteins       Date:  2009-12
  6 in total

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