Literature DB >> 15972006

Deriving an ontology for human gene expression sources from the CYTOMER database on human organs and cell types.

Holger Michael1, Xin Chen, Ellen Fricke, Martin Haubrock, Remko Ricanek, Edgar Wingender.   

Abstract

CYTOMER is a relational database of organs/tissues, cell types, physiological systems and developmental stages that currently focuses on the human system. From this database, we have derived an ontology for anatomical and morphological structures for the human organism which includes all embryonal stages and the cell types constituting these structures. The ontology has been transferred to the OWL format and is freely available for download at http://cytomer/bioinf.med.uni-goettingen.de.

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Mesh：

Year:  2005        PMID： 15972006

Source DB:  PubMed          Journal:  In Silico Biol        ISSN： 1386-6338


  8 in total

1.  Integrative content-driven concepts for bioinformatics "beyond the cell".

Authors:  Edgar Wingender; Torsten Crass; Jennifer D Hogan; Alexander E Kel; Olga V Kel-Margoulis; Anatolij P Potapov
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

2.  P-Match: transcription factor binding site search by combining patterns and weight matrices.

Authors:  D S Chekmenev; C Haid; A E Kel
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

3.  The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources.

Authors:  Marion Gremse; Antje Chang; Ida Schomburg; Andreas Grote; Maurice Scheer; Christian Ebeling; Dietmar Schomburg
Journal:  Nucleic Acids Res       Date:  2010-10-28       Impact factor: 16.971

4.  EndoNet: an information resource about endocrine networks.

Authors:  Anatolij Potapov; Ines Liebich; Jürgen Dönitz; Knut Schwarzer; Nicole Sasse; Torsten Schoeps; Torsten Crass; Edgar Wingender
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

5.  TiProD: the Tissue-specific Promoter Database.

Authors:  Xin Chen; Jian-min Wu; Klaus Hornischer; Alexander Kel; Edgar Wingender
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

6.  EndoNet: an information resource about the intercellular signaling network.

Authors:  Jürgen Dönitz; Edgar Wingender
Journal:  BMC Syst Biol       Date:  2014-04-24

7.  The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications.

Authors:  Jürgen Dönitz; Edgar Wingender
Journal:  Front Genet       Date:  2012-10-05       Impact factor: 4.599

8.  EndoNet: an information resource about regulatory networks of cell-to-cell communication.

Authors:  Jürgen Dönitz; Björn Goemann; Muriel Lizé; Holger Michael; Nicole Sasse; Edgar Wingender; Anatolij P Potapov
Journal:  Nucleic Acids Res       Date:  2007-11-27       Impact factor: 16.971
  8 in total

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