Literature DB >> 15970447

Rendering of quantum topological atoms and bonds.

M Rafat1, M Devereux, P L A Popelier.   

Abstract

In this article, we describe and apply an algorithm that visualizes atoms and bonds in molecules and van der Waals complexes, based on the topology of the electron density. The theory of quantum chemical topology defines both atoms and bonds via a single consistent procedure, and enables the association of an atomic shape with an atomic property (charge, dipole moment, volume, ...). Special attention is paid to the bridging of gaps arising in interatomic surfaces, in the presence of ring critical points or high ellipticity. This algorithm, in conjunction with the graphical user interface of the computer program MORPHY enables robust and efficient rendering of complicated interatomic surfaces, as found in larger systems.

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Year:  2005        PMID: 15970447     DOI: 10.1016/j.jmgm.2005.05.004

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  4 in total

1.  The role of OH…O and CH…O hydrogen bonds and H…H interactions in ethanol/methanol-water heterohexamers.

Authors:  Sol M Mejía; Juan F Espinal; Matthew J L Mills; Fanor Mondragón
Journal:  J Mol Model       Date:  2016-07-14       Impact factor: 1.810

2.  Unfavorable regions in the ramachandran plot: Is it really steric hindrance? The interacting quantum atoms perspective.

Authors:  Peter I Maxwell; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-08-25       Impact factor: 3.376

3.  Does the Intra-Atomic Deformation Energy of Interacting Quantum Atoms Represent Steric Energy?

Authors:  Benjamin C B Symons; Dominic J Williamson; Campbell M Brooks; Alex L Wilson; Paul L A Popelier
Journal:  ChemistryOpen       Date:  2019-02-08       Impact factor: 2.911

4.  The ANANKE relative energy gradient (REG) method to automate IQA analysis over configurational change.

Authors:  Joseph C R Thacker; Paul L A Popelier
Journal:  Theor Chem Acc       Date:  2017-07-05       Impact factor: 1.702

  4 in total

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