Literature DB >> 15970333

DATA-MEAns: an open source tool for the classification and management of neural ensemble recordings.

María P Bonomini1, José M Ferrandez, Jose Angel Bolea, Eduardo Fernandez.   

Abstract

The number of laboratories using techniques that allow to acquire simultaneous recordings of as many units as possible is considerably increasing. However, the development of tools used to analyse this multi-neuronal activity is generally lagging behind the development of the tools used to acquire these data. Moreover, the data exchange between research groups using different multielectrode acquisition systems is hindered by commercial constraints such as exclusive file structures, high priced licenses and hard policies on intellectual rights. This paper presents a free open-source software for the classification and management of neural ensemble data. The main goal is to provide a graphical user interface that links the experimental data to a basic set of routines for analysis, visualization and classification in a consistent framework. To facilitate the adaptation and extension as well as the addition of new routines, tools and algorithms for data analysis, the source code and documentation are freely available.

Mesh:

Year:  2005        PMID: 15970333     DOI: 10.1016/j.jneumeth.2005.04.008

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  5 in total

1.  QSpike tools: a generic framework for parallel batch preprocessing of extracellular neuronal signals recorded by substrate microelectrode arrays.

Authors:  Mufti Mahmud; Rocco Pulizzi; Eleni Vasilaki; Michele Giugliano
Journal:  Front Neuroinform       Date:  2014-03-19       Impact factor: 4.081

Review 2.  Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data.

Authors:  Valentina A Unakafova; Alexander Gail
Journal:  Front Neuroinform       Date:  2019-07-30       Impact factor: 4.081

3.  A data repository and analysis framework for spontaneous neural activity recordings in developing retina.

Authors:  Stephen John Eglen; Michael Weeks; Mark Jessop; Jennifer Simonotto; Tom Jackson; Evelyne Sernagor
Journal:  Gigascience       Date:  2014-03-26       Impact factor: 6.524

Review 4.  Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges.

Authors:  Mufti Mahmud; Stefano Vassanelli
Journal:  Front Neurosci       Date:  2016-06-02       Impact factor: 4.677

5.  SpikeInterface, a unified framework for spike sorting.

Authors:  Alessio P Buccino; Cole L Hurwitz; Samuel Garcia; Jeremy Magland; Joshua H Siegle; Roger Hurwitz; Matthias H Hennig
Journal:  Elife       Date:  2020-11-10       Impact factor: 8.140

  5 in total

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