Literature DB >> 15969350

[Stress activation and genomic impact of plant retrotransposons].

Marie-Angèle Grandbastien1.   

Abstract

Retrotransposons are mobile genetic elements that amplify via reverse transcription of an RNA intermediate. They insert at different positions in host genomes, can be amplified to high copy number and are an important source of genetic diversity. The tobacco TntlA retrotransposon is activated by stresses of pathogen origin, and regulatory sequences involved in this activation are similar to those of various stress responsive plant genes. Tnt1A belongs to an ancient family present in various Solanaceous species, and composed of populations of closely related elements that differ in their expression conditions. This expression is often observed in response to stress, but with specificities that differ sensibly for each population, possibly refecting an adaptative response of ancestral populations to different stimuli, during the radiation of Solanaceous species and genera. Microbial factors efficiently stimulate Tnt1A amplification, reinforcing the hypothesis that environmental challenges can generate genetic modifications. In addition, TntlA transposition preferentially targets genic regions, suggesting that the activity of transposable elements can modulate genic functions and represent a natural source of phenotypic diversity.

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Year:  2004        PMID: 15969350

Source DB:  PubMed          Journal:  J Soc Biol        ISSN: 1295-0661


  12 in total

1.  Ttd1a promoter is involved in DNA-protein binding by salt and light stresses.

Authors:  Pasqualina Woodrow; Giovanni Pontecorvo; Loredana F Ciarmiello; Amodio Fuggi; Petronia Carillo
Journal:  Mol Biol Rep       Date:  2010-11-23       Impact factor: 2.316

2.  Polymorphism of a new Ty1-copia retrotransposon in durum wheat under salt and light stresses.

Authors:  Pasqualina Woodrow; Giovanni Pontecorvo; Stefania Fantaccione; Amodio Fuggi; Ioannis Kafantaris; Danila Parisi; Petronia Carillo
Journal:  Theor Appl Genet       Date:  2010-03-17       Impact factor: 5.699

Review 3.  Altering Genomic Integrity: Heavy Metal Exposure Promotes Transposable Element-Mediated Damage.

Authors:  Maria E Morales; Geraldine Servant; Catherine Ade; Astrid M Roy-Engel
Journal:  Biol Trace Elem Res       Date:  2015-03-14       Impact factor: 3.738

4.  Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia.

Authors:  Ningning Wang; Hongyan Wang; Hui Wang; Di Zhang; Ying Wu; Xiufang Ou; Shuang Liu; Zhenying Dong; Bao Liu
Journal:  BMC Plant Biol       Date:  2010-08-26       Impact factor: 4.215

5.  Low temperature-responsive changes in the anther transcriptome's repeat sequences are indicative of stress sensitivity and pollen sterility in rice strains.

Authors:  Seiya Ishiguro; Kei Ogasawara; Kaien Fujino; Yutaka Sato; Yuji Kishima
Journal:  Plant Physiol       Date:  2013-12-27       Impact factor: 8.340

6.  Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.

Authors:  Andrea D McCue; Saivageethi Nuthikattu; Sarah H Reeder; R Keith Slotkin
Journal:  PLoS Genet       Date:  2012-02-09       Impact factor: 5.917

7.  A genome-wide survey of switchgrass genome structure and organization.

Authors:  Manoj K Sharma; Rita Sharma; Peijian Cao; Jerry Jenkins; Laura E Bartley; Morgan Qualls; Jane Grimwood; Jeremy Schmutz; Daniel Rokhsar; Pamela C Ronald
Journal:  PLoS One       Date:  2012-04-12       Impact factor: 3.240

8.  A new approach for annotation of transposable elements using small RNA mapping.

Authors:  Moaine El Baidouri; Kyung Do Kim; Brian Abernathy; Siwaret Arikit; Florian Maumus; Olivier Panaud; Blake C Meyers; Scott A Jackson
Journal:  Nucleic Acids Res       Date:  2015-03-26       Impact factor: 16.971

9.  Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs.

Authors:  Andrea D McCue; Saivageethi Nuthikattu; R Keith Slotkin
Journal:  RNA Biol       Date:  2013-07-02       Impact factor: 4.652

10.  Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing.

Authors:  Corrinne E Grover; Mark A Arick; Justin L Conover; Adam Thrash; Guanjing Hu; William S Sanders; Chuan-Yu Hsu; Rubab Zahra Naqvi; Muhammad Farooq; Xiaochong Li; Lei Gong; Joann Mudge; Thiruvarangan Ramaraj; Joshua A Udall; Daniel G Peterson; Jonathan F Wendel
Journal:  Genome Biol Evol       Date:  2017-12-01       Impact factor: 3.416

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