Literature DB >> 15966726

Mutational and structural studies of the diisopropylfluorophosphatase from Loligo vulgaris shed new light on the catalytic mechanism of the enzyme.

Vicky Katsemi1, Christian Lücke, Juergen Koepke, Frank Löhr, Steffen Maurer, Günter Fritzsch, Heinz Rüterjans.   

Abstract

The active site, the substrate binding site, and the metal binding sites of the diisopropylfluorophosphatase (DFPase) from Loligo vulgaris have been modified by means of site-directed mutagenesis to improve our understanding of the reaction mechanism. Enzymatic characterization of mutants located in the major groove of the substrate binding pocket indicates that large hydrophobic side chains at these positions are favorable for substrate turnover. Moreover, the active site residue His287 proved to be beneficial, but not essential, for DFP hydrolysis. In most cases, hydrophobic side chains at position 287 led to significant catalytic activities although reduced relative to the wild-type enzyme. With respect to the Ca-1 binding site, where catalysis occurs, various mutants indicated that the net charge at this calcium-binding site as well as the relative positions of the charged calcium ligands is crucial for catalytic activity. The importance of the electrostatic potential at the active site was furthermore revealed by various mutations of residues lining the interior of the central water-filled tunnel, which traverses the entire protein structure. In this respect, the structural features of residue His181, which is located at the opposite end of the DFPase tunnel relative to the active site, were characterized extensively. It was concluded that a tunnel-spanning hydrogen bond network, which includes a large number of apparently slow exchanging water molecules, relays any modifications in the electrostatics of the system to the active site, thus affecting the catalytic reactivity of the enzyme.

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Year:  2005        PMID: 15966726     DOI: 10.1021/bi0500675

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Neutron structure and mechanistic studies of diisopropyl fluorophosphatase (DFPase).

Authors:  Julian C H Chen; Marat Mustyakimov; Benno P Schoenborn; Paul Langan; Marc Michael Blum
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

2.  Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris.

Authors:  Marc-Michael Blum; Alexander Koglin; Heinz Rüterjans; Benno Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

3.  The evolution of function in strictosidine synthase-like proteins.

Authors:  Michael A Hicks; Alan E Barber; Lesley-Ann Giddings; Jenna Caldwell; Sarah E O'Connor; Patricia C Babbitt
Journal:  Proteins       Date:  2011-09-21

Review 4.  Catalytic mechanisms for phosphotriesterases.

Authors:  Andrew N Bigley; Frank M Raushel
Journal:  Biochim Biophys Acta       Date:  2012-04-26

Review 5.  Current and emerging strategies for organophosphate decontamination: special focus on hyperstable enzymes.

Authors:  Pauline Jacquet; David Daudé; Janek Bzdrenga; Patrick Masson; Mikael Elias; Eric Chabrière
Journal:  Environ Sci Pollut Res Int       Date:  2016-02-02       Impact factor: 4.223

6.  Catalytic bioscavengers against toxic esters, an alternative approach for prophylaxis and treatments of poisonings.

Authors:  Patrick Masson; Daniel Rochu
Journal:  Acta Naturae       Date:  2009-04       Impact factor: 1.845

7.  Aminoalcohol-Induced Activation of Organophosphorus Hydrolase (OPH) towards Diisopropylfluorophosphate (DFP).

Authors:  Dandan Li; Yunze Zhang; Haitao Song; Liangqiu Lu; Deli Liu; Yongze Yuan
Journal:  PLoS One       Date:  2017-01-13       Impact factor: 3.240

8.  Magnetic removal of Entamoeba cysts from water using chitosan oligosaccharide-coated iron oxide nanoparticles.

Authors:  Sudeep Shukla; Vikas Arora; Alka Jadaun; Jitender Kumar; Nishant Singh; Vinod Kumar Jain
Journal:  Int J Nanomedicine       Date:  2015-07-31

9.  Hydrolysis of DFP and the nerve agent (S)-sarin by DFPase proceeds along two different reaction pathways: implications for engineering bioscavengers.

Authors:  Troy Wymore; Martin J Field; Paul Langan; Jeremy C Smith; Jerry M Parks
Journal:  J Phys Chem B       Date:  2014-04-21       Impact factor: 2.991

Review 10.  New insights about enzyme evolution from large scale studies of sequence and structure relationships.

Authors:  Shoshana D Brown; Patricia C Babbitt
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

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