Literature DB >> 15962337

In silico design and adaptive evolution of Escherichia coli for production of lactic acid.

Stephen S Fong1, Anthony P Burgard, Christopher D Herring, Eric M Knight, Frederick R Blattner, Costas D Maranas, Bernhard O Palsson.   

Abstract

The development and validation of new methods to help direct rational strain design for metabolite overproduction remains an important problem in metabolic engineering. Here we show that computationally predicted E. coli strain designs, calculated from a genome-scale metabolic model, can lead to successful production strains and that adaptive evolution of the engineered strains can lead to improved production capabilities. Three strain designs for lactate production were implemented yielding a total of 11 evolved production strains that were used to demonstrate the utility of this integrated approach. Strains grown on 2 g/L glucose at 37 degrees C showed lactate titers ranging from 0.87 to 1.75 g/L and secretion rates that were directly coupled to growth rates. Copyright 2005 Wiley Periodicals, Inc

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Year:  2005        PMID: 15962337     DOI: 10.1002/bit.20542

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  109 in total

1.  Optimality and thermodynamics determine the evolution of transcriptional regulatory networks.

Authors:  Marco Avila-Elchiver; Deepak Nagrath; Martin L Yarmush
Journal:  Mol Biosyst       Date:  2011-11-10

2.  Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator.

Authors:  Zarath M Summers; Toshiyuki Ueki; Wael Ismail; Shelley A Haveman; Derek R Lovley
Journal:  ISME J       Date:  2011-11-24       Impact factor: 10.302

3.  Dynamic epistasis for different alleles of the same gene.

Authors:  Lin Xu; Brandon Barker; Zhenglong Gu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

Review 4.  In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.

Authors:  Radhakrishnan Mahadevan; Bernhard Ø Palsson; Derek R Lovley
Journal:  Nat Rev Microbiol       Date:  2010-12-06       Impact factor: 60.633

Review 5.  In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories.

Authors:  Paulo Maia; Miguel Rocha; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

6.  Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Authors:  Natalie C Duarte; Scott A Becker; Neema Jamshidi; Ines Thiele; Monica L Mo; Thuy D Vo; Rohith Srivas; Bernhard Ø Palsson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

7.  Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints.

Authors:  Nathan D Price; Ines Thiele; Bernhard Ø Palsson
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

Review 8.  Modelling spatio-temporal interactions within the cell.

Authors:  Padmini Rangamani; Ravi Iyengar
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

Review 9.  Microbial production of advanced biofuels.

Authors:  Jay Keasling; Hector Garcia Martin; Taek Soon Lee; Aindrila Mukhopadhyay; Steven W Singer; Eric Sundstrom
Journal:  Nat Rev Microbiol       Date:  2021-06-25       Impact factor: 60.633

10.  Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain.

Authors:  Vasiliy A Portnoy; Markus J Herrgård; Bernhard Ø Palsson
Journal:  Appl Environ Microbiol       Date:  2008-10-24       Impact factor: 4.792

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