Literature DB >> 15961034

Tunable promoters in systems biology.

Ivan Mijakovic1, Dina Petranovic, Peter Ruhdal Jensen.   

Abstract

The construction of synthetic promoter libraries has represented a major breakthrough in systems biology, enabling the subtle tuning of enzyme activities. A number of tools are now available that allow the modulation of gene expression and the detection of changes in expression patterns. But, how does one choose the correct promoter and what are the appropriate methods for reading promoter strength? Furthermore, how fine should the tuning of gene expression be for some specific applications and how can the simultaneous and individual tuning of multiple genes be achieved? Some recent studies have helped us to find answers to many of these questions.

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Year:  2005        PMID: 15961034     DOI: 10.1016/j.copbio.2005.04.003

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  17 in total

Review 1.  Designer promoter: an artwork of cis engineering.

Authors:  Rajesh Mehrotra; Gauri Gupta; Riccha Sethi; Purva Bhalothia; Narayan Kumar; Sandhya Mehrotra
Journal:  Plant Mol Biol       Date:  2011-02-14       Impact factor: 4.076

2.  Construction of a novel synthetic root-specific promoter and its characterization in transgenic tobacco plants.

Authors:  Chakravarthi Mohan; Ashwin Narayan Jayanarayanan; Subramonian Narayanan
Journal:  3 Biotech       Date:  2017-07-10       Impact factor: 2.406

3.  Synthetic circuits integrating logic and memory in living cells.

Authors:  Piro Siuti; John Yazbek; Timothy K Lu
Journal:  Nat Biotechnol       Date:  2013-02-10       Impact factor: 54.908

4.  Relationship between promoter sequence and its strength in gene expression.

Authors:  Jingwei Li; Yunxin Zhang
Journal:  Eur Phys J E Soft Matter       Date:  2014-09-30       Impact factor: 1.890

Review 5.  Digital and analog gene circuits for biotechnology.

Authors:  Nathaniel Roquet; Timothy K Lu
Journal:  Biotechnol J       Date:  2014-02-20       Impact factor: 4.677

6.  Continuous control of the flow in biochemical pathways through 5' untranslated region sequence modifications in mRNA expressed from the broad-host-range promoter Pm.

Authors:  Rahmi Lale; Laila Berg; Friederike Stüttgen; Roman Netzer; Marit Stafsnes; Trygve Brautaset; Trond Erik Vee Aune; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2011-02-18       Impact factor: 4.792

7.  Construction and functional characteristics of tuber-specific and cold-inducible chimeric promoters in potato.

Authors:  Qing Zhu; Botao Song; Chi Zhang; Yongbin Ou; Conghua Xie; Jun Liu
Journal:  Plant Cell Rep       Date:  2007-08-22       Impact factor: 4.570

Review 8.  Minimizing acetate formation in E. coli fermentations.

Authors:  Marjan De Mey; Sofie De Maeseneire; Wim Soetaert; Erick Vandamme
Journal:  J Ind Microbiol Biotechnol       Date:  2007-08-01       Impact factor: 3.346

9.  Fine tuning of the lactate and diacetyl production through promoter engineering in Lactococcus lactis.

Authors:  Tingting Guo; Jian Kong; Li Zhang; Chenchen Zhang; Shumin Hu
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

Review 10.  Regulation by transcription factors in bacteria: beyond description.

Authors:  Enrique Balleza; Lucia N López-Bojorquez; Agustino Martínez-Antonio; Osbaldo Resendis-Antonio; Irma Lozada-Chávez; Yalbi I Balderas-Martínez; Sergio Encarnación; Julio Collado-Vides
Journal:  FEMS Microbiol Rev       Date:  2009-01       Impact factor: 16.408

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