Literature DB >> 15954776

Protein boson peak originated from hydration-related multiple minima energy landscape.

Yasumasa Joti1, Akio Kitao, Nobuhiro Go.   

Abstract

The boson peak is a broad peak found in the low-frequency region of inelastic neutron and Raman scattering spectra in many glassy materials, including biopolymers below approximately 200 K. Here, we give a novel insight into the origins of the protein boson peak, which may also be valid for materials other than proteins. Molecular simulation reveals that the structured water molecules around a protein molecule increase the number of local minima in the protein energy landscape, which plays a key role in the origin of the boson peak. The peak appears when the protein dynamics are trapped within a local energy minimum at cryogenic temperatures. This trapping causes very low frequency collective motions to shift to higher frequencies. We demonstrate that the characteristic frequency of such systems shifts higher as the temperature decreases also in model one-dimensional energy surfaces with multiple minima.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15954776     DOI: 10.1021/ja0425886

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  4 in total

1.  Hydration affects both harmonic and anharmonic nature of protein dynamics.

Authors:  H Nakagawa; Y Joti; A Kitao; M Kataoka
Journal:  Biophys J       Date:  2008-06-13       Impact factor: 4.033

2.  Universality and Structural Implications of the Boson Peak in Proteins.

Authors:  Hiroshi Nakagawa; Yasumasa Joti; Akio Kitao; Osamu Yamamuro; Mikio Kataoka
Journal:  Biophys J       Date:  2019-06-14       Impact factor: 4.033

3.  Cryo-Cooling Effect on DHFR Crystal Studied by Replica-Exchange Molecular Dynamics Simulations.

Authors:  Tetsuro Nagai; Florence Tama; Osamu Miyashita
Journal:  Biophys J       Date:  2018-12-13       Impact factor: 4.033

4.  Hydration effect on low-frequency protein dynamics observed in simulated neutron scattering spectra.

Authors:  Yasumasa Joti; Hiroshi Nakagawa; Mikio Kataoka; Akio Kitao
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.