Literature DB >> 15951371

Response to comment by Almeida et al.: free area theories for lipid bilayers--predictive or not?

Emma Falck1, Michael Patra, Mikko Karttunen, Marja T Hyvönen, Ilpo Vattulainen.   

Abstract

Free area theories for lateral diffusion in lipid bilayers are reviewed and discussed. It has been suggested by Almeida et al. that free area theories yield quantitative predictions for lateral diffusion coefficients of lipids. We investigate the plausibility of this suggestion by first sketching what is to be expected of a quantitative theory with predictive power, and subsequently examining whether existing free area theories comply with these expectations. Our conclusion is that current free area theories for lipid bilayers are not quantitative theories with predictive power. They involve a number of adjustable parameters, all of which are not estimated independently, but derived from fitting the theory to the very data whose behavior the theory is supposed to predict. Further, the interpretation and behavior of some of the parameters are ambiguous. The best example is the so-called activation barrier, whose qualitative behavior with the cholesterol concentration in a DMPC bilayer varies depending on the experimental method used to generate the input data and the exact assumptions made to formulate the theory. Independent determination of the activation barrier from numerical simulations or experiments appears to be very difficult.

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Year:  2005        PMID: 15951371      PMCID: PMC1366571          DOI: 10.1529/biophysj.105.065714

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.

Authors:  Emma Falck; Michael Patra; Mikko Karttunen; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

2.  Biology of the inner space: voids in biopolymers

Authors: 
Journal:  J Theor Biol       Date:  1998-11-21       Impact factor: 2.691

3.  Lateral diffusion rates of phosphatidylcholine in vesicle membranes: effects of cholesterol and hydrocarbon phase transitions.

Authors:  P R Cullis
Journal:  FEBS Lett       Date:  1976-11       Impact factor: 4.124

4.  Sterol structure determines the separation of phases and the curvature of the liquid-ordered phase in model membranes.

Authors:  Kirsten Bacia; Petra Schwille; Teymuras Kurzchalia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-18       Impact factor: 11.205

5.  Application of self-organizing maps in conformational analysis of lipids.

Authors:  M T Hyvönen; Y Hiltunen; W El-Deredy; T Ojala; J Vaara; P T Kovanen; M Ala-Korpela
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

6.  Impact of cholesterol on voids in phospholipid membranes.

Authors:  Emma Falck; Michael Patra; Mikko Karttunen; Marja T Hyvönen; Ilpo Vattulainen
Journal:  J Chem Phys       Date:  2004-12-22       Impact factor: 3.488

7.  The effect of cholesterol on the lateral diffusion of phospholipids in oriented bilayers.

Authors:  Andrey Filippov; Greger Orädd; Göran Lindblom
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

8.  Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation.

Authors:  P B Moore; C F Lopez; M L Klein
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

9.  Use of a fluorescent cholesterol derivative to measure lateral mobility of cholesterol in membranes.

Authors:  M R Alecio; D E Golan; W R Veatch; R R Rando
Journal:  Proc Natl Acad Sci U S A       Date:  1982-09       Impact factor: 11.205

10.  Lipid lateral diffusion in ordered and disordered phases in raft mixtures.

Authors:  Andrey Filippov; Greger Orädd; Göran Lindblom
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

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  8 in total

1.  Diffusion and partitioning of fluorescent lipid probes in phospholipid monolayers.

Authors:  M Gudmand; Matthias Fidorra; T Bjørnholm; T Heimburg
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

2.  Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity.

Authors:  Emma Falck; Jari T Hautala; Mikko Karttunen; Paavo K J Kinnunen; Michael Patra; Heikki Saaren-Seppälä; Ilpo Vattulainen; Susanne K Wiedmer; Juha M Holopainen
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

3.  Influence of lipid chemistry on membrane fluidity: tail and headgroup interactions.

Authors:  Kalani J Seu; Lee R Cambrea; R Michael Everly; Jennifer S Hovis
Journal:  Biophys J       Date:  2006-09-01       Impact factor: 4.033

4.  Atomistic simulation of lipid and DiI dynamics in membrane bilayers under tension.

Authors:  Hari S Muddana; Ramachandra R Gullapalli; Evangelos Manias; Peter J Butler
Journal:  Phys Chem Chem Phys       Date:  2010-12-09       Impact factor: 3.676

5.  What happens if cholesterol is made smoother: importance of methyl substituents in cholesterol ring structure on phosphatidylcholine-sterol interaction.

Authors:  Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; Mikko Karttunen
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

6.  Real-time partitioning of octadecyl rhodamine B into bead-supported lipid bilayer membranes revealing quantitative differences in saturable binding sites in DOPC and 1:1:1 DOPC/SM/cholesterol membranes.

Authors:  Tione Buranda; Yang Wu; Dominique Perez; Alexandre Chigaev; Larry A Sklar
Journal:  J Phys Chem B       Date:  2010-01-28       Impact factor: 2.991

7.  Effect of membrane tension on the physical properties of DOPC lipid bilayer membrane.

Authors:  A Srinivas Reddy; Dora Toledo Warshaviak; Mirianas Chachisvilis
Journal:  Biochim Biophys Acta       Date:  2012-05-12

8.  The alternative oxidase mediated respiration contributes to growth, resistance to hyperosmotic media and accumulation of secondary metabolites in three species.

Authors:  V Sitaramam; Shilpa Pachapurkar; Trupti Gokhale
Journal:  Physiol Mol Biol Plants       Date:  2008-09-27
  8 in total

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