Literature DB >> 15945778

Selection of temperature intervals for parallel-tempering simulations.

Aminata Kone, David A Kofke.   

Abstract

Year:  2005        PMID: 15945778     DOI: 10.1063/1.1917749

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


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  16 in total

1.  Simulating replica exchange simulations of protein folding with a kinetic network model.

Authors:  Weihua Zheng; Michael Andrec; Emilio Gallicchio; Ronald M Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

2.  Simple continuous and discrete models for simulating replica exchange simulations of protein folding.

Authors:  Weihua Zheng; Michael Andrec; Emilio Gallicchio; Ronald M Levy
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

3.  A Second Look at Canonical Sampling of Biomolecules using Replica Exchange Simulation.

Authors:  Daniel M Zuckerman; Edward Lyman
Journal:  J Chem Theory Comput       Date:  2006       Impact factor: 6.006

4.  Comparison of sampling efficiency between simulated tempering and replica exchange.

Authors:  Cheng Zhang; Jianpeng Ma
Journal:  J Chem Phys       Date:  2008-10-07       Impact factor: 3.488

5.  Optimal replica exchange method combined with Tsallis weight sampling.

Authors:  Jaegil Kim; John E Straub
Journal:  J Chem Phys       Date:  2009-04-14       Impact factor: 3.488

6.  MDMS: Molecular Dynamics Meta-Simulator for evaluating exchange type sampling methods.

Authors:  Daniel B Smith; Asim Okur; Bernard Brooks
Journal:  Chem Phys Lett       Date:  2012-07-19       Impact factor: 2.328

7.  Sampling multiple scoring functions can improve protein loop structure prediction accuracy.

Authors:  Yaohang Li; Ionel Rata; Eric Jakobsson
Journal:  J Chem Inf Model       Date:  2011-07-08       Impact factor: 4.956

8.  Conformational sampling of oligosaccharides using Hamiltonian replica exchange with two-dimensional dihedral biasing potentials and the weighted histogram analysis method (WHAM).

Authors:  Mingjun Yang; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2015-02-10       Impact factor: 6.006

9.  Development and initial testing of an empirical forcefield for simulation of poly(alkylthiophenes).

Authors:  Alik S Widge; Yoky Matsuoka; Maria Kurnikova
Journal:  J Mol Graph Model       Date:  2008-03-06       Impact factor: 2.518

10.  Replica exchange statistical temperature Monte Carlo.

Authors:  Jaegil Kim; Thomas Keyes; John E Straub
Journal:  J Chem Phys       Date:  2009-03-28       Impact factor: 3.488

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