Literature DB >> 15927276

Oligonucleotide-based microarray: a new improvement in microarray detection of plant viruses.

D Bystricka1, O Lenz, I Mraz, L Piherova, S Kmoch, M Sip.   

Abstract

Microarrays are one of the new emerging methods in plant virology currently being developed by various laboratories. In this study, a new approach is described on the detection of plant viruses using short synthetic single-stranded oligomers (40 nt) instead of PCR products as capture probes. A microchip detecting potato viruses, PVA, PVS, PVM, PVX, PVY and PLRV, in both single and mixed infections was developed and tested. The chip was also designed to distinguish between the main strains of PVY and PVS. Results of initial tests with PVY(NTN) and PVY(O) strains using several different probes for one virus are presented. Possibilities and advantages of the new oligonucleotide-based microarray approach for plant viral diagnosis are discussed.

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Year:  2005        PMID： 15927276     DOI： 10.1016/j.jviromet.2005.04.009

Source DB:  PubMed          Journal:  J Virol Methods        ISSN： 0166-0934            Impact factor:   2.014


  8 in total

1.  Microarray-based identification of antigenic variants of foot-and-mouth disease virus: a bioinformatics quality assessment.

Authors:  Verónica Martín; Celia Perales; David Abia; Angel R Ortíz; Esteban Domingo; Carlos Briones
Journal:  BMC Genomics       Date:  2006-05-18       Impact factor: 3.969

2.  Oligonucleotide microarray with a minimal number of probes for the detection and identification of thirteen genera of plant viruses.

Authors:  Yongjiang Zhang; Jun Yin; Guifen Li; Mingfu Li; Xin Huang; Hongjun Chen; Wenjun Zhao; Shuifang Zhu
Journal:  J Virol Methods       Date:  2010-03-19       Impact factor: 2.014

3.  Potato virus X: A global potato-infecting virus and type member of the Potexvirus genus.

Authors:  Jeanmarie Verchot
Journal:  Mol Plant Pathol       Date:  2021-11-17       Impact factor: 5.663

4.  Development of the large-scale oligonucleotide chip for the diagnosis of plant viruses and its practical use.

Authors:  Moon Nam; Jeong-Seon Kim; Seungmo Lim; Chung Youl Park; Jeong-Gyu Kim; Hong-Soo Choi; Hyoun-Sub Lim; Jae Sun Moon; Su-Heon Lee
Journal:  Plant Pathol J       Date:  2014-03       Impact factor: 1.795

Review 5.  Recent Advances on the Multiplex Molecular Detection of Plant Viruses and Viroids.

Authors:  Vicente Pallás; Jesus A Sánchez-Navarro; Delano James
Journal:  Front Microbiol       Date:  2018-09-10       Impact factor: 5.640

6.  Oligonucleotide-based microarray for detection of plant viruses employing sequence-independent amplification of targets.

Authors:  Veenita Grover; Margaret L Pierce; Peter Hoyt; Fengqiu Zhang; Ulrich Melcher
Journal:  J Virol Methods       Date:  2009-10-20       Impact factor: 2.014

7.  A diagnostic oligonucleotide microarray for simultaneous detection of grapevine viruses.

Authors:  Esteban A Engel; Paula F Escobar; Luis A Rojas; Paulina A Rivera; Nicola Fiore; Pablo D T Valenzuela
Journal:  J Virol Methods       Date:  2009-11-13       Impact factor: 2.014

Review 8.  Viruses Infecting Trees and Herbs That Produce Edible Fleshy Fruits with a Prominent Value in the Global Market: An Evolutionary Perspective.

Authors:  Lizette Liliana Rodríguez-Verástegui; Candy Yuriria Ramírez-Zavaleta; María Fernanda Capilla-Hernández; Josefat Gregorio-Jorge
Journal:  Plants (Basel)       Date:  2022-01-13
  8 in total

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