Literature DB >> 15924434

Sulfoxidation mechanisms catalyzed by cytochrome P450 and horseradish peroxidase models: spin selection induced by the ligand.

Devesh Kumar1, Sam P de Visser, Pankaz K Sharma, Hajime Hirao, Sason Shaik.   

Abstract

The sulfoxidation of dimethyl sulfide (DMS), by two different heme-type enzyme models (without the protein), namely, horseradish peroxidase (HRP) and cytochrome P450 (P450), was studied using density functional theory. The models differ from each other by the axial ligand of the iron, which is imidazole in the case of HRP and thiolate in the case of P450. The computational results reveal a concerted oxygen atom transfer to sulfur, with spin-state selection dependent upon the identity of the proximal ligand. In the case of thiolate, the mechanism prefers the high-spin quartet pathway; whereas in the case of imidazole, the mechanism involves two-state reactivity (TSR), with competing quartet and doublet spin states. Furthermore, with thiolate the high-spin transition state, (4)TS(P450), has an upright conformation with a large Fe-O-S(DMS) angle of 147 degrees , whereas the low-spin species, (2)TS(P450), has a small angle and its Fe-O moiety makes an O-N(Por) bond with one of the nitrogen atoms of the porphine macrocycle. By contrast, when the proximal ligand is imidazole, both transition states possess a bent Fe-O bond and an O-N(Por) bond. These spin-state selection patterns obey simple orbital-selection rules, which are manifestations of the electronic nature of the ligand, i.e., the electron-releasing effect of the thiolate vis-a-vis the electron-withdrawal effect of imidazole. Other possible reactivity expressions of the spin-selection patterns are discussed [Dowers, T. S., Rock, D. A., Rock, D. A., Jones, J. P. (2004) J. Am. Chem. Soc. 126, 8868-8869]. Theory shows that intrinsically, HRP should be as reactive as P450 toward sulfoxidation.

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Year:  2005        PMID: 15924434     DOI: 10.1021/bi050348c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

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Authors:  Thomas L Poulos
Journal:  Arch Biochem Biophys       Date:  2010-03-03       Impact factor: 4.013

2.  Axial and equatorial ligand effects on biomimetic cysteine dioxygenase model complexes.

Authors:  Luis E Gonzalez-Ovalle; Matthew G Quesne; Devesh Kumar; David P Goldberg; Sam P de Visser
Journal:  Org Biomol Chem       Date:  2012-06-19       Impact factor: 3.876

3.  Singlet versus Triplet Reactivity in an Mn(V)-Oxo Species: Testing Theoretical Predictions Against Experimental Evidence.

Authors:  Tzuhsiung Yang; Matthew G Quesne; Heather M Neu; Fabián G Cantú Reinhard; David P Goldberg; Sam P de Visser
Journal:  J Am Chem Soc       Date:  2016-09-14       Impact factor: 15.419

4.  Systematic study on the mechanism of aldehyde oxidation to carboxylic acid by cytochrome P450.

Authors:  Xiaojing Liu; Yong Wang; Keli Han
Journal:  J Biol Inorg Chem       Date:  2007-07-28       Impact factor: 3.862

5.  How Are Substrate Binding and Catalysis Affected by Mutating Glu127 and Arg161 in Prolyl-4-hydroxylase? A QM/MM and MD Study.

Authors:  Amy Timmins; Sam P de Visser
Journal:  Front Chem       Date:  2017-11-09       Impact factor: 5.221

6.  Quantum Mechanics/Molecular Mechanics Studies on the Relative Reactivities of Compound I and II in Cytochrome P450 Enzymes.

Authors:  Verònica Postils; Maud Saint-André; Amy Timmins; Xiao-Xi Li; Yong Wang; Josep M Luis; Miquel Solà; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2018-07-06       Impact factor: 5.923

7.  Bioengineering of Cytochrome P450 OleTJE: How Does Substrate Positioning Affect the Product Distributions?

Authors:  Fabián G Cantú Reinhard; Yen-Ting Lin; Agnieszka Stańczak; Sam P de Visser
Journal:  Molecules       Date:  2020-06-09       Impact factor: 4.411

  7 in total

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