Literature DB >> 15922591

Structural divergence and distant relationships in proteins: evolution of the globins.

Juliette T J Lecomte1, David A Vuletich, Arthur M Lesk.   

Abstract

The globin family has long been known from studies of approximately 150-residue proteins such as vertebrate myoglobins and haemoglobins. Recently, this family has been enriched by the investigation of the sequences and structures of truncated globins, which have the same basic topology but are approximately 30 residues shorter and exhibit functions other than the familiar one of binding diatomic ligands. The divergence of protein sequences, structures and functions reveals Nature's exploration of the potential inherent in a folding pattern, that is, the topology of the native structure. The observation of what remains constant and what varies during the evolution of a protein family reveals essential features of structure and function. Study of proteins with a wide range of divergence can therefore sharpen our understanding of how different amino acid sequences can determine similar three-dimensional structures. Globins have provided, and continue to provide, interesting material for such studies.

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Year:  2005        PMID: 15922591     DOI: 10.1016/j.sbi.2005.05.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  20 in total

1.  Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition.

Authors:  Federico G Hoffmann; Juan C Opazo; David Hoogewijs; Thomas Hankeln; Bettina Ebner; Serge N Vinogradov; Xavier Bailly; Jay F Storz
Journal:  Mol Biol Evol       Date:  2012-01-24       Impact factor: 16.240

2.  A phylogenetic and structural analysis of truncated hemoglobins.

Authors:  David A Vuletich; Juliette T J Lecomte
Journal:  J Mol Evol       Date:  2006-02-10       Impact factor: 2.395

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Journal:  Blood       Date:  2008-11-15       Impact factor: 22.113

4.  Analysis of raphidophyte assimilatory nitrate reductase reveals unique domain architecture incorporating a 2/2 hemoglobin.

Authors:  Jennifer J Stewart; Kathryn J Coyne
Journal:  Plant Mol Biol       Date:  2011-10-25       Impact factor: 4.076

5.  ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.

Authors:  Janez Konc; Dusanka Janezic
Journal:  Bioinformatics       Date:  2010-03-19       Impact factor: 6.937

6.  Energetic profiling of protein folds.

Authors:  Jason Vertrees; James O Wrabl; Vincent J Hilser
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

7.  The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1.

Authors:  Christopher M Bianchetti; George C Blouin; Eduard Bitto; John S Olson; George N Phillips
Journal:  Proteins       Date:  2010-03

8.  Rapid comparison of properties on protein surface.

Authors:  Lee Sael; David La; Bin Li; Raif Rustamov; Daisuke Kihara
Journal:  Proteins       Date:  2008-10

9.  Spectroscopic characterization of a truncated hemoglobin from the nitrogen-fixing bacterium Herbaspirillum seropedicae.

Authors:  Guilherme Razzera; Javier Vernal; Debora Baruh; Viviane I Serpa; Carolina Tavares; Flávio Lara; Emanuel M Souza; Fábio O Pedrosa; Fábio C L Almeida; Hernán Terenzi; Ana Paula Valente
Journal:  J Biol Inorg Chem       Date:  2008-06-12       Impact factor: 3.358

10.  New-old hemoglobin-like proteins of symbiotic dinoflagellates.

Authors:  Nedeljka N Rosic; William Leggat; Paulina Kaniewska; Sophie Dove; Ove Hoegh-Guldberg
Journal:  Ecol Evol       Date:  2013-02-26       Impact factor: 2.912

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