Literature DB >> 15922358

The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication.

Ghislaine Henneke1, Didier Flament, Ulrich Hübscher, Joël Querellou, Jean-Paul Raffin.   

Abstract

DNA polymerases carry out DNA synthesis during DNA replication, DNA recombination and DNA repair. During the past five years, the number of DNA polymerases in both eukarya and bacteria has increased to at least 19 and multiple biological roles have been assigned to many DNA polymerases. Archaea, the third domain of life, on the other hand, have only a subset of the eukaryotic-like DNA polymerases. The diversity among the archaeal DNA polymerases poses the intriguing question of their functional tasks. Here, we focus on the two identified DNA polymerases, the family B DNA polymerase B (PabpolB) and the family D DNA polymerase D (PabpolD) from the hyperthermophilic euryarchaeota Pyrococcus abyssi. Our data can be summarized as follows: (i) both Pabpols are DNA polymerizing enzymes exclusively; (ii) their DNA binding properties as tested in gel shift competition assays indicated that PabpolD has a preference for a primed template; (iii) PabPolD is a primer-directed DNA polymerase independently of the primer composition whereas PabpolB behaves as an exclusively DNA primer-directed DNA polymerase; (iv) PabPCNA is required for PabpolD to perform efficient DNA synthesis but not PabpolB; (v) PabpolD, but not PabpolB, contains strand displacement activity; (vii) in the presence of PabPCNA, however, both Pabpols D and B show strand displacement activity; and (viii) we show that the direct interaction between PabpolD and PabPCNA is DNA-dependent. Our data imply that PabPolD might play an important role in DNA replication likely together with PabpolB, suggesting that archaea require two DNA polymerases at the replication fork.

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Year:  2005        PMID: 15922358     DOI: 10.1016/j.jmb.2005.04.042

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

1.  Modulation of the Pyrococcus abyssi NucS endonuclease activity by replication clamp at functional and structural levels.

Authors:  Christophe Creze; Alessio Ligabue; Sébastien Laurent; Roxane Lestini; Sergey P Laptenok; Joelle Khun; Marten H Vos; Mirjam Czjzek; Hannu Myllykallio; Didier Flament
Journal:  J Biol Chem       Date:  2012-03-19       Impact factor: 5.157

2.  Structure-specific nuclease activities of Pyrococcus abyssi RNase HII.

Authors:  Sébastien Le Laz; Audrey Le Goaziou; Ghislaine Henneke
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

3.  Intramolecular disulfide bond between catalytic cysteines in an intein precursor.

Authors:  Wen Chen; Lingyun Li; Zhenming Du; Jiajing Liu; Julie N Reitter; Kenneth V Mills; Robert J Linhardt; Chunyu Wang
Journal:  J Am Chem Soc       Date:  2012-01-27       Impact factor: 15.419

Review 4.  DNA replication in the archaea.

Authors:  Elizabeth R Barry; Stephen D Bell
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

5.  New DNA polymerase from the hyperthermophilic marine archaeon Thermococcus thioreducens.

Authors:  Damien Marsic; Jean-Michel Flaman; Joseph D Ng
Journal:  Extremophiles       Date:  2008-08-01       Impact factor: 2.395

Review 6.  Replicative DNA polymerases.

Authors:  Erik Johansson; Nicholas Dixon
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

Review 7.  Archaeology of eukaryotic DNA replication.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

8.  Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase.

Authors:  Natsuki Takashima; Sonoko Ishino; Keisuke Oki; Mika Takafuji; Takeshi Yamagami; Ryotaro Matsuo; Kouta Mayanagi; Yoshizumi Ishino
Journal:  Extremophiles       Date:  2018-11-30       Impact factor: 2.395

9.  The complete genome sequence of Haloferax volcanii DS2, a model archaeon.

Authors:  Amber L Hartman; Cédric Norais; Jonathan H Badger; Stéphane Delmas; Sam Haldenby; Ramana Madupu; Jeffrey Robinson; Hoda Khouri; Qinghu Ren; Todd M Lowe; Julie Maupin-Furlow; Mecky Pohlschroder; Charles Daniels; Friedhelm Pfeiffer; Thorsten Allers; Jonathan A Eisen
Journal:  PLoS One       Date:  2010-03-19       Impact factor: 3.240

10.  Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol epsilon and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors.

Authors:  Tahir H Tahirov; Kira S Makarova; Igor B Rogozin; Youri I Pavlov; Eugene V Koonin
Journal:  Biol Direct       Date:  2009-03-18       Impact factor: 4.540

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