Literature DB >> 15922334

A putative novel alpha/beta hydrolase ORFan family in Bacillus.

Naomi Siew1, Harpreet Kaur Saini, Daniel Fischer.   

Abstract

A large number of sequences in each newly sequenced genome correspond to lineage and species-specific proteins, also known as ORFans. Amongst these ORFans, a large number are sequences with unknown structures and functions. We have identified a family of sequences, annotated as hypothetical proteins, which are specific to Bacillus and have carried out a computational study aimed at characterizing this family. Fold-recognition methods predict that these sequences belong to the alpha/beta hydrolase fold. We suggest possible catalytic triads for the ORFans and propose a hypothesis regarding the possible families within the alpha/beta hydrolase superfamily to which they may belong.

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Year:  2005        PMID: 15922334     DOI: 10.1016/j.febslet.2005.04.030

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

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Authors:  Patricia Renesto; Chantal Abergel; Philippe Decloquement; Danielle Moinier; Saïd Azza; Hiroyuki Ogata; Patrick Fourquet; Jean-Pierre Gorvel; Jean-Michel Claverie
Journal:  J Virol       Date:  2006-09-13       Impact factor: 5.103

2.  A cold-adapted esterase of a novel marine isolate, Pseudoalteromonas arctica: gene cloning, enzyme purification and characterization.

Authors:  Rami Al Khudary; Ramprasath Venkatachalam; Moritz Katzer; Skander Elleuche; Garabed Antranikian
Journal:  Extremophiles       Date:  2010-03-09       Impact factor: 2.395

3.  On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer.

Authors:  Yanbin Yin; Daniel Fischer
Journal:  BMC Evol Biol       Date:  2006-08-16       Impact factor: 3.260

4.  FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.

Authors:  Harpreet Kaur Saini; Daniel Fischer
Journal:  Nucleic Acids Res       Date:  2007-05-30       Impact factor: 16.971

5.  Structural features and the persistence of acquired proteins.

Authors:  Hema Prasad Narra; Matthew H J Cordes; Howard Ochman
Journal:  Proteomics       Date:  2008-11       Impact factor: 3.984

6.  Structural and functional insights into Mimivirus ORFans.

Authors:  Harpreet Kaur Saini; Daniel Fischer
Journal:  BMC Genomics       Date:  2007-05-09       Impact factor: 3.969

7.  Identification and investigation of ORFans in the viral world.

Authors:  Yanbin Yin; Daniel Fischer
Journal:  BMC Genomics       Date:  2008-01-19       Impact factor: 3.969

  7 in total

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