Literature DB >> 15919727

SECISDesign: a server to design SECIS-elements within the coding sequence.

Anke Busch1, Sebastian Will, Rolf Backofen.   

Abstract

SUMMARY: SECISDesign is a server for the design of SECIS-elements and arbitrary RNA-elements within the coding sequence of an mRNA. The element has to satisfy both structure and sequence constraints. At the same time, a certain amino acid similarity to the original protein has to be kept. The designed sequence can be used for recombinant expression of selenoproteins in Escherichia coli. AVAILABILITY: The server is available at http://www.bio.inf.uni-jena.de/Software/SECISDesign/index.html.

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Year:  2005        PMID： 15919727     DOI： 10.1093/bioinformatics/bti507

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  Probing the role of the proximal heme ligand in cytochrome P450cam by recombinant incorporation of selenocysteine.

Authors:  Caroline Aldag; Igor A Gromov; Inés García-Rubio; Konstanze von Koenig; Ilme Schlichting; Bernhard Jaun; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-17       Impact factor: 11.205

2.  Site-specific insertion of selenium into the redox-active disulfide of the flavoprotein augmenter of liver regeneration.

Authors:  Stephanie Schaefer-Ramadan; Colin Thorpe; Sharon Rozovsky
Journal:  Arch Biochem Biophys       Date:  2014-02-28       Impact factor: 4.013

3.  Factors and selenocysteine insertion sequence requirements for the synthesis of selenoproteins from a gram-positive anaerobe in Escherichia coli.

Authors:  Torsten Gursinsky; Daniel Gröbe; Angelika Schierhorn; Jana Jäger; Jan R Andreesen; Brigitte Söhling
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

Review 4.  Using chemical approaches to study selenoproteins-focus on thioredoxin reductases.

Authors:  Robert J Hondal
Journal:  Biochim Biophys Acta       Date:  2009-05-04

5.  Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Authors:  Martin Raden; Syed M Ali; Omer S Alkhnbashi; Anke Busch; Fabrizio Costa; Jason A Davis; Florian Eggenhofer; Rick Gelhausen; Jens Georg; Steffen Heyne; Michael Hiller; Kousik Kundu; Robert Kleinkauf; Steffen C Lott; Mostafa M Mohamed; Alexander Mattheis; Milad Miladi; Andreas S Richter; Sebastian Will; Joachim Wolff; Patrick R Wright; Rolf Backofen
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

6.  antaRNA--Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization.

Authors:  Robert Kleinkauf; Torsten Houwaart; Rolf Backofen; Martin Mann
Journal:  BMC Bioinformatics       Date:  2015-11-18       Impact factor: 3.169
  6 in total

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