Literature DB >> 15919196

Structure, folding and mechanisms of ribozymes.

David M J Lilley1.   

Abstract

The past two years have seen exciting developments in RNA catalysis. A completely new ribozyme (possibly two) has come along and several new structures have been determined, including three different group I intron species. Although the origins of catalysis remain incompletely understood, a significant convergence of views has happened in the past year, together with the discovery of new super-fast ribozymes. There is persuasive evidence of general acid-base chemistry in nucleolytic ribozymes, whereas catalysis of peptidyl transfer in the ribosome seems to result largely from orientation and proximity effects. Lastly, important new folding-enhancing elements have been discovered.

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Year:  2005        PMID: 15919196     DOI: 10.1016/j.sbi.2005.05.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  48 in total

Review 1.  The ubiquitous hammerhead ribozyme.

Authors:  Christian Hammann; Andrej Luptak; Jonathan Perreault; Marcos de la Peña
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

2.  New strategy for the synthesis of chemically modified RNA constructs exemplified by hairpin and hammerhead ribozymes.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

3.  Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme.

Authors:  Cédric Reymond; Dominique Lévesque; Martin Bisaillon; Jean-Pierre Perreault
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

4.  Role of lysine binding residues in the global folding of the lysC riboswitch.

Authors:  Erich Smith-Peter; Anne-Marie Lamontagne; Daniel A Lafontaine
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

6.  Modular evolution and increase of functional complexity in replicating RNA molecules.

Authors:  Susanna C Manrubia; Carlos Briones
Journal:  RNA       Date:  2006-11-14       Impact factor: 4.942

7.  Liposome membrane can induce self-cleavage of RNA that models the core fragments of hammerhead ribozyme.

Authors:  Keishi Suga; Seishiro Tanaka; Hiroshi Umakoshi
Journal:  Eur Biophys J       Date:  2015-09-18       Impact factor: 1.733

8.  Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server.

Authors:  Joseph D Yesselman; Rhiju Das
Journal:  Methods Mol Biol       Date:  2016

Review 9.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

10.  Salt-dependent folding energy landscape of RNA three-way junction.

Authors:  Gengsheng Chen; Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

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